BAC Information

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BAC

Clone NameMSMg01-186K11
Chromosome4 (Build37)
Map Location 65,342,004 - 65,342,319
singlet/doubletsinglet
Overlap geneAstn2
Upstream genePappa, Trim32
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186K11.T7 (MSMg01no186_k11.b1)MSMg01-186K11.TJ (MSMg01no186_k11.g1)
ACCAG378270AG378271
length774817
length of high quality
(start - end)		319 (46 - 364)182 (78 - 259)
definitionCHROMAT_FILE: MSMg01no186_k11.b1 PHD_FILE: MSMg01no186_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:42 2005CHROMAT_FILE: MSMg01no186_k11.g1 PHD_FILE: MSMg01no186_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCGAGCAAGGGTAAGCCCTATGTTTTAGAAAATGGCTCTGGCTGCC
GCTTGGAGGATAGATGTGAATGCATTAGAATTAAAGGTGAGCAATATTTA
GAAAGGCTTGGAGGGAAGAGACATGCAGAAGTGGGTGTGAAGCTTTGCTA
TTTATCCAGATCTTTGACTTCCTAGGGCAGTCCAGCTCCCTAAAAGCTGG
GGGAAGAGAGCCATATAATCTCTCCTTCATGGGGTCGAATAAGGAACAAT
GCAATGACTAGAGTCAAAAGATCTTATAAGGTCTAAGGTAGAGTGGACAT
ATCACCAGTCCATAATTATGGTACCGCCGCGCCACTGAGCCTGATCATGA
CGTCCCTCAGTCCTATACCCCACGTCTAGAGGAAGACACTGGCAGATAGT
TAGAGTCTTTAGGACTTGGCTTTGTCGCTTATTGTATGTGAGCTTACTGG
AAGTTCATTGAATCTTTGTCGATTCGGATTTCCTTTTTCATATTACTCCA
CTCTGTGGCTTATGTGCGCTCGTTTTCTTATGATCACGTTCTTCTTATGT
CTTCGTGTTTTATACTCTTGATTTACTTACATTATTCGGACTTTTATTTT
GTCCCGGATTCTTCTTCCACCGCTACGTTAACGCCCTCCATACTGTTGGG
TCCTCGCTTATTCAGCTTTATACTTTTTGAGTCTTTCTATCCCCACCTTA
TATTTTCCCCCCATCCCCTTCTTT

TCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTAGTGGGCTCATTTGAGCTTCA
CAGGTTCTGGTTGCTTTGAAGGTATATTTTGAGATATAAAACACATTTAT
TGTTTTGTTACTTCTATGTATAGCTTTTGATAGTTAGTCACGTTGTAGGT
AAGATAGGTTTCTGTTTGTTCTTTTGCCCTCAGCACCTGGAATGTTGGAG
GAGGGCTGTCTGCTTGACTGGATTGAGTCCCATACCCTCGACGATATTCT
ACATTCTGCAGTATTTCTGCCGCTCTCTTTTTTGTTGTCCTACTCTACGC
GCGGAATGGAACAACTTTTTTTTTTTTCCCCGCCCCCCCCCCGCAGGTAT
TTTTTTTTATTCTTCGCTTTCCCCCCCCCCCTGTTTAATTACAATTCATG
CCTACTCGATCGTCGTTCCATATTCTTTTTCTCGCTCTTGTCCGTATCCC
TCAGTTTTTTTCTTTTCCCTATCCCCCCCTCCTATACGTCCCCTCCTTTC
GTCCTTTACTTTTTCCCCTTTCCCTTTATCGCTTCGGTTTCTTATCTTTC
TTTTTTCTATCATTCTTACCTTTTTCCTTCCCCCTACTCTCCTTCTCTCC
CTTTCTCTTATATATCTCTCCTCGTTCTGTTCTCTCCCCGCTTTTTTACA
TCATTCTTTCCCCATTCCATTTTAACTTATCATTTGTCTGAACGCATTTT
CTATTNCCTTTTTCGACTCATGTATTACTTTTTGTTGTTATTCTCGCGTT
ACTCTCTGTCTTATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_k11.b1 MSMg01no186_k11.b1 CHROMAT_FILE:
MSMg01no186_k11.b1 PHD_FILE: MSMg01no186_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:42 2005
         (319 letters)



>mm_chr4_65341801_65342519
          Length = 719

 Score =  596 bits (308), Expect = e-175
 Identities = 314/316 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccgagcaagggtaagccctatgttttagaaaatggctctggctgccgcttggag 63
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccgagcaagggtaagccctgtgttttagaaaatggctctggctgccgcttggag 263

                                                                       
Query: 64  gatagatgtgaatgcattagaattaaaggtgagcaatatttagaaaggcttggagggaag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gatagatgtgaatgcattagaattaaaggtgagcaatatttagaaaggcttggagggaag 323

                                                                       
Query: 124 agacatgcagaagtgggtgtgaagctttgctatttatccagatctttgacttcctagggc 183
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agatatgcagaagtgggtgtgaagctttgctatttatccagatctttgacttcctagggc 383

                                                                       
Query: 184 agtccagctccctaaaagctgggggaagagagccatataatctctccttcatggggtcga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agtccagctccctaaaagctgggggaagagagccatataatctctccttcatggggtcga 443

                                                                       
Query: 244 ataaggaacaatgcaatgactagagtcaaaagatcttataaggtctaaggtagagtggac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ataaggaacaatgcaatgactagagtcaaaagatcttataaggtctaaggtagagtggac 503

                           
Query: 304 atatcaccagtccata 319
           ||||||||||||||||
Sbjct: 504 atatcaccagtccata 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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