Query= MSMg01no187_d02.b1 MSMg01no187_d02.b1 CHROMAT_FILE:
MSMg01no187_d02.b1 PHD_FILE: MSMg01no187_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:25 2005
(326 letters)
>mm_chr4_74841955_74842681
Length = 727
Score = 482 bits (249), Expect = e-140
Identities = 283/295 (95%), Gaps = 3/295 (1%)
Strand = Plus / Minus
Query: 4 ggaattctttctaactataaattaaaccatttgcctttatctaagtacaaatcttagggt 63
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 497 ggaattctttctagctataaattaaaccatttgcctttatctaagtagaaatcttagggt 438
Query: 64 gtatgttggaggcagcatagattgctatttttaatcatcactaccactgaaaggttcaca 123
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 437 atatgttggaggcagcatagaatgctatttctaatcatcactaccactgaaaggttcaca 378
Query: 124 gcacattggcatagttctttaggtgtgtaccaatattatttaaattttaaacttgtaatt 183
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 377 gcacattggcatagttctttaggtatataccaatattatttaaattttaaacttgtaatt 318
Query: 184 tcctatatgtatgccttttatttcc--ttttttccctaagtgtggtccagtattgtatta 241
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 317 tcctatatgtatgccttttatttcctttttttttcctaagtgtggtccagtattgtatta 258
Query: 242 gatttgacaaatgaaaggggagaggaataagtgctttttttcccccagaaatcac 296
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 257 gatttgacaaatgaaaggggagaggaataagtgc-tttttccccccagaaatcac 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 727
Length adjustment: 9
Effective length of query: 317
Effective length of database: 718
Effective search space: 227606
Effective search space used: 227606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no187_d02.g1 MSMg01no187_d02.g1 CHROMAT_FILE:
MSMg01no187_d02.g1 PHD_FILE: MSMg01no187_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:26 2005
(514 letters)
>mm_chr4_74736687_74737600
Length = 914
Score = 978 bits (506), Expect = 0.0
Identities = 513/516 (99%), Gaps = 2/516 (0%)
Strand = Plus / Plus
Query: 1 cattcttgagagaaaaaggaaaatgaagtacaaaagcatgcctgaaaatgcataacagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattcttgagagaaaaaggaaaatgaagtacaaaagcatgcctgaaaatgcataacagaa 260
Query: 61 acaagcagtttaatctgtccatgatctctgtttaaaatatcctcctgtcaccgacagtaa 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 acaagcagtttaatctgtccatgatctctgtttaaaatatcctcctgccaccgacagtaa 320
Query: 121 ggtagaggaatatcagagtctgcaacaatttcaaggtcttcatatatcagtattttcatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtagaggaatatcagagtctgcaacaatttcaaggtcttcatatatcagtattttcatg 380
Query: 181 atagacagggaactctgtgattatggaaagtctctaaacagcttttgtaaaccttcagta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagacagggaactctgtgattatggaaagtctctaaacagcttttgtaaaccttcagta 440
Query: 241 cttgtagtctcaccagagccatttttcttgaggccaccaagattcatcttgctgtaccta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttgtagtctcaccagagccatttttcttgaggccaccaagattcatcttgctgtaccta 500
Query: 301 cttttcttgtttatgtatattagcactacaagcccaggattccctgctctgttgtaaagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttttcttgtttatgtatattagcactacaagcccaggattccctgctctgttgtaaagt 560
Query: 361 ttactgggattcagaaaagtattatctgccaacatgtttaccataattgtgcttcccttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttactgggattcagaaaagtattatctgccaacatgtttaccataattgtgcttcccttg 620
Query: 421 ctgtatttagtctgtactactaattcgtagatactttataatacatttggtctaatttgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgtatttagtctgtactactaattcgtagatactttataatacatttggtctaatttgg 680
Query: 481 gtttttttttttttt--ggtttttatttattttggt 514
||||||||||||||| |||||||||||||||||||
Sbjct: 681 gttttttttttttttttggtttttatttattttggt 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space: 455616
Effective search space used: 455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
