BAC Information

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BAC

Clone NameMSMg01-188F05
Chromosome4 (Build37)
Map Location 145,660,477 - 145,661,088
singlet/doubletsinglet
Overlap geneLOC100041433
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390
Downstream geneLOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188F05.T7 (MSMg01no188_f05.b1)MSMg01-188F05.TJ (MSMg01no188_f05.g1)
ACCAG379381AG379382
length741754
length of high quality
(start - end)
322 (61 - 382)612 (74 - 685)
definitionCHROMAT_FILE: MSMg01no188_f05.b1 PHD_FILE: MSMg01no188_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:56 2005CHROMAT_FILE: MSMg01no188_f05.g1 PHD_FILE: MSMg01no188_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:57 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTCCCCTCTCTTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCATACAGGAGAGAAACCTTACAAATGTAGTG
AATGTGACAAATGCTTTACTGAAAAAGGCCATCAAAGAATTCATACAGGA
GAGATACCTTACAAATAGTTTGTATGTGACAAATACAATACAATGTCAGT
CTGAGAAATCATCAGTTTTTAATACAGTAGAGAATATTTATAAATGAAGT
GAACGAGACAATCCTTTACCAAGATATATCATCTTAAAAATCATTAGAGA
ATACTTACAGAAGAGAAACTTTTCAATTATATCAAAGGTATGAATCCTTT
ACTCTTGGCCTATTTCCTAGAATGTTAACTGTGAATACCTACCGGACACA
AACTTAACTCATGCATTGTATGAAGAAATATCTTTGACTTCATTTCAGGT
CAAAGAGAATATCTAATAACTTTTTAGGGGAAAGTATTTCTGTTGGGGAA
AGTGTGGCCTGTGTTTTATTCACGTTCTATTCTTGACAACAATTGAGGCT
CCACACTAGAGAATTAGTATGATTATGAAAATCATGTGAAAACTTTCATG
CACTGTTCATATCTTACATAATGTCCACTATTTTTTGCTTGACTATACTC
TCGAAATGTAAAAATGTAGAAAGCCTTTTCTGATACCTTTTTACTCGTTC
ACCCTTAATTGTTACAAGATGAAGACAAGTTGGCTAAGTGN
TCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGATGAACTCTCAGATAGCCTTTGT
CAGTAAAGCATTTGTCACACTCACTGCATTTGTAAGGTTTCTCTCCAGTA
TGAATTCTCTGATGAACTCTCAGATAGCCTTTGTCAGTAAAACATTTGTC
ACACTCACTGCATTTGTAAGGTTTCTCTCCCGTATGAATTCTCTGATGCT
TTCTCAGAGTGCATTTGTCAGTAAAGCATTTGTCGCATTCACTACATTTG
TAAGGTTTCTCTCCTGAATGAATTGTATGATGAATACTAAGATGGGAAGG
TTGGGTAAAGCATTTGTCACTTTCACTATATTTGTAAGATTTCTTTCCTG
GCTTTCTCTGCTGACTTTGAAGACTGTCACTCTGAGTAAAGCATTTGTCA
AATTCACCACAAGTGTAAGTGTTCATTTCACTATTGTTTTGTCTCACAAT
GGGTTTATGTTTAGAAACCAAAACCTCATCAAGATTTTTATTTCTGTTGT
GTTCTTTCTTCTCTATGTGGGTTCCTTGATTGAGACTAATGATAGAAGAC
CCCTTTAAACAGTTTACACAGTCTTTATATGTGCAAACTTCTTTAGTGGT
CCCAGTTTTATGTCTTTTTAGGTTTGAGAATTGGAATGTGGCATCTCTTT
GGTTAGTGTTATAAGGCGCCCTTTCGGAGGATTCATGAATCCCATTTACT
AAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_f05.g1 MSMg01no188_f05.g1 CHROMAT_FILE:
MSMg01no188_f05.g1 PHD_FILE: MSMg01no188_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:57 2005
         (612 letters)



>mm_chr4_145660277_145661288
          Length = 1012

 Score = 1176 bits (608), Expect = 0.0
 Identities = 611/612 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgatgaactctcagatagcctttgtcagtaaagcatttgtcacactcactgcatttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgatgaactctcagatagcctttgtcagtaaagcatttgtcacactcactgcatttgt 260

                                                                       
Query: 61  aaggtttctctccagtatgaattctctgatgaactctcagatagcctttgtcagtaaaac 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 aaggtttctctccagtatgaattctctgatgaactctcagatagcctttgtcagtaaagc 320

                                                                       
Query: 121 atttgtcacactcactgcatttgtaaggtttctctcccgtatgaattctctgatgctttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttgtcacactcactgcatttgtaaggtttctctcccgtatgaattctctgatgctttc 380

                                                                       
Query: 181 tcagagtgcatttgtcagtaaagcatttgtcgcattcactacatttgtaaggtttctctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagagtgcatttgtcagtaaagcatttgtcgcattcactacatttgtaaggtttctctc 440

                                                                       
Query: 241 ctgaatgaattgtatgatgaatactaagatgggaaggttgggtaaagcatttgtcacttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgaatgaattgtatgatgaatactaagatgggaaggttgggtaaagcatttgtcacttt 500

                                                                       
Query: 301 cactatatttgtaagatttctttcctggctttctctgctgactttgaagactgtcactct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cactatatttgtaagatttctttcctggctttctctgctgactttgaagactgtcactct 560

                                                                       
Query: 361 gagtaaagcatttgtcaaattcaccacaagtgtaagtgttcatttcactattgttttgtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagtaaagcatttgtcaaattcaccacaagtgtaagtgttcatttcactattgttttgtc 620

                                                                       
Query: 421 tcacaatgggtttatgtttagaaaccaaaacctcatcaagatttttatttctgttgtgtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcacaatgggtttatgtttagaaaccaaaacctcatcaagatttttatttctgttgtgtt 680

                                                                       
Query: 481 ctttcttctctatgtgggttccttgattgagactaatgatagaagacccctttaaacagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctttcttctctatgtgggttccttgattgagactaatgatagaagacccctttaaacagt 740

                                                                       
Query: 541 ttacacagtctttatatgtgcaaacttctttagtggtcccagttttatgtctttttaggt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttacacagtctttatatgtgcaaacttctttagtggtcccagttttatgtctttttaggt 800

                       
Query: 601 ttgagaattgga 612
           ||||||||||||
Sbjct: 801 ttgagaattgga 812



 Score =  250 bits (129), Expect = 3e-70
 Identities = 171/185 (92%)
 Strand = Plus / Plus

                                                                       
Query: 137 gcatttgtaaggtttctctcccgtatgaattctctgatgctttctcagagtgcatttgtc 196
           ||||||||||||||||| ||| |||||||||||||||||||||| |||| || |||||||
Sbjct: 1   gcatttgtaaggtttctttcctgtatgaattctctgatgctttcccagaatgaatttgtc 60

                                                                       
Query: 197 agtaaagcatttgtcgcattcactacatttgtaaggtttctctcctgaatgaattgtatg 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 61  agtaaagcatttgtcgcattcactacatttgtaaggtttctctcctgaatgaattctacg 120

                                                                       
Query: 257 atgaatactaagatgggaaggttgggtaaagcatttgtcactttcactatatttgtaaga 316
           ||||| |||||||||||| ||||||||||||||||||||||  |||||  ||||||||| 
Sbjct: 121 atgaaaactaagatgggatggttgggtaaagcatttgtcacactcactgcatttgtaagg 180

                
Query: 317 tttct 321
           |||||
Sbjct: 181 tttct 185


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 90
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 2
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)