BAC Information

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BAC

Clone NameMSMg01-188H20
Chromosome4 (Build37)
Map Location 94,098,251 - 94,211,262
singlet/doubletdoublet
Overlap gene5830433M19Rik
Upstream genenone
Downstream genePlaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun, LOC100042411
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188H20.T7 (MSMg01no188_h20.b1)MSMg01-188H20.TJ (MSMg01no188_h20.g1)
ACCAG379494AG379495
length740759
length of high quality
(start - end)		321 (45 - 365)194 (128 - 321)
definitionCHROMAT_FILE: MSMg01no188_h20.b1 PHD_FILE: MSMg01no188_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:09 2005CHROMAT_FILE: MSMg01no188_h20.g1 PHD_FILE: MSMg01no188_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,098,251 - 94,098,565)(94,211,069 - 94,211,262)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTAGAGTACCTGAGGTGAAATGAAGACAGAAATACCCTACTTGCCT
CCTGCTTTAAGTTACCTTGTAGATCCAAATGAAGAGGCAGTGCCTCTTAG
CAAACGCCACCTGTAACAATTACTCCAATAAAGAATTCTAAACCTAGTCT
ATGACCTAATTTTGCCTCTTAGAATAAGAAAAACCAAAGACTGCTAAAAA
CAATTGACTTCTCTTAGATATAAGTATCAGTAGATATAAAATAATCTCTT
TCCTAATTTTCTGGTATTAAAATGTCTTTCTAAAAATAATATAAGTTCCT
AGTAGATGGTGGTCATATATTATCGCCTTTAGTAAGTTTGTAATTAATAA
ATTGTTTTTCATAACTTTGAAGGATATGAAGGGAAACCCTAGTAAGTATG
TGATATTCTCTCTGGAAATACTGAACTGGGCTATCCCTGTCCCAGCATGC
ATCAAAAAAGAAACCCTGTTGTTTTCTGATCTTTCATTTCAGCAAAGGAC
AATGTTTAAAAGTCAATATTTCTTCATTTCCTGGATTTTCTTCTGATGAG
AAAGGACAAACACTCCCTACCTACCTCCTAATACACACAAGGTACTTGAA
GACAGAAATTATTTCCTCAAAGTGGCTTATTCATGCTCTTGAAACCACTT
CCTTCAATGGCCTAATCACTTAAATCATAGTTTAAGGTTA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTTGAAGTCTCGAGAGACTAATCT
TTGTATCCATGCATCTGTGTTCCTCAGTAATGACGGGGCTAGAATTGAAT
AGGGTAATTTCTGCTGGGTGCTGGTTTCTTTCAGGGGATGTGATTAGGTT
AAGCGTTTGAGTCACGCTCTTGGCTGCCAGACTAAAGAGAACCGAGGAAG
AGTCAGCTTTTCTCTTGACTCTGAGTCGTCTTCTTGTACCTCCTCTTCAC
CTAGTTTAGCAAGAAGCAAGCTGTTTATAGAGTGATTCTGTTGTTAATAC
CACAAACACCAGTTTTTTTTTTACCCCCCCCCCCCCCCAGAAAAAACACT
TATAATTAGCCTAAGACATTCCCCCCCCACACAAAAAAAGAAAAAAACTA
GGGGAGGTTTGAGAAAATGAAACATCAAAGGTAAAAGCTCAAAACTTATT
AGAGCATACACATAGAGCTTTAGCCATTCAGGAACTTGGTCTTTGTTCAG
GCCTCACATAGAGAGCTTTTTTGAGTTGAAATTAATTAGTGACCGACTTT
TCCTTTGGCCACTTTATCAAATACCCCATATTATTGTAATATTTTTCAAG
TCGATTTTTATTCTTTTTGTTTACTGTACCCTCCCTTTTTATTTGTATGT
CCATCCTTTACCGTTTTTTTGCTTTTAATACTTTTTACTCCCCCTTCTTT
TTTTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_h20.b1 MSMg01no188_h20.b1 CHROMAT_FILE:
MSMg01no188_h20.b1 PHD_FILE: MSMg01no188_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:09 2005
         (321 letters)



>mm_chr4_94098048_94098768
          Length = 721

 Score =  594 bits (307), Expect = e-174
 Identities = 313/315 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctagagtacctgaggtgaaatgaagacagaaataccctacttgcctcctgctt 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctagagtaccttaggtgaaatgaagacagaaataccctacttgcctcctgctt 263

                                                                       
Query: 64  taagttaccttgtagatccaaatgaagaggcagtgcctcttagcaaacgccacctgtaac 123
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 264 taagttaccttgtagatccaaatgaagaggcagtgcctcttagcaaacaccacctgtaac 323

                                                                       
Query: 124 aattactccaataaagaattctaaacctagtctatgacctaattttgcctcttagaataa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aattactccaataaagaattctaaacctagtctatgacctaattttgcctcttagaataa 383

                                                                       
Query: 184 gaaaaaccaaagactgctaaaaacaattgacttctcttagatataagtatcagtagatat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaaaaaccaaagactgctaaaaacaattgacttctcttagatataagtatcagtagatat 443

                                                                       
Query: 244 aaaataatctctttcctaattttctggtattaaaatgtctttctaaaaataatataagtt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaaataatctctttcctaattttctggtattaaaatgtctttctaaaaataatataagtt 503

                          
Query: 304 cctagtagatggtgg 318
           |||||||||||||||
Sbjct: 504 cctagtagatggtgg 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no188_h20.g1 MSMg01no188_h20.g1 CHROMAT_FILE:
MSMg01no188_h20.g1 PHD_FILE: MSMg01no188_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:10 2005
         (194 letters)



>mm_chr4_94210869_94211462
          Length = 594

 Score =  368 bits (190), Expect = e-106
 Identities = 193/194 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taatgacggggctagaattgaatagggtaatttctgctgggtgctggtttctttcagggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 taatgacggggctagaattgaatagggtaatttctgctgggtgctggtttctttcagggg 335

                                                                       
Query: 61  atgtgattaggttaagcgtttgagtcacgctcttggctgccagactaaagagaaccgagg 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 atgtgattaggttaaacgtttgagtcacgctcttggctgccagactaaagagaaccgagg 275

                                                                       
Query: 121 aagagtcagcttttctcttgactctgagtcgtcttcttgtacctcctcttcacctagttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aagagtcagcttttctcttgactctgagtcgtcttcttgtacctcctcttcacctagttt 215

                         
Query: 181 agcaagaagcaagc 194
           ||||||||||||||
Sbjct: 214 agcaagaagcaagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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