BAC Information

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BAC

Clone NameMSMg01-189P23
Chromosome4 (Build37)
Map Location 109,790,175 - 109,856,732
singlet/doubletdoublet
Overlap genenone
Upstream geneOsbpl9, Calr4, Eps15, LOC666144, 4922503N01Rik, Rnf11, 4930522H14Rik, Cdkn2c, LOC100040307, Faf1, Dmrta2
Downstream geneElavl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189P23.T7 (MSMg01no189_p23.b1)MSMg01-189P23.TJ (MSMg01no189_p23.g1)
ACCAG380489AG380490
length745729
length of high quality
(start - end)		319 (46 - 364)650 (74 - 723)
definitionCHROMAT_FILE: MSMg01no189_p23.b1 PHD_FILE: MSMg01no189_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:06 2005CHROMAT_FILE: MSMg01no189_p23.g1 PHD_FILE: MSMg01no189_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,856,418 - 109,856,732)(109,790,175 - 109,790,824)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACTTAGGCAGAGTAGAAATGTCTTTCTTAAAAAGGTTGACTTGG
AAATCAAACCTGAAGAACCATCATGAAAAGTGGCAGAAAGAGTCACCAAA
GAAGTGGACAGTTTCTAGGAGACAACAGGTGACCAATGGACAAAAGAAGA
GTAAGGAAAAAAAGTAGGGGACACTGGTGAGTGTGCAAAGGCCAGATCCT
ACCAGCTTCTGAGGATCTTCAGTCTGAGTGTGTTTTGTTAAAGGGTCACT
GGCTTCATTTGCATATTAACTTCTGGAATAGGAAATGTGTAATGATGACA
AAACTTGGGGATTTGGATCCTTCGCCCCCCCCTCCCTTCCTGGTTTAAAG
CTATACAACTGTCCTGGCTAGTGTTAATGAAAACTTGACAGAAGCTAAAG
TCATCTGGAACTTGCAATTGACAGAATCCCTTCTTAGGACTTGCCTGTAT
GAAAGCTTGTGGTGTGTTTTCCTAATCAATCATCCCTGTGGATGATGGTA
CTGCTGAACTGGTGGTCCTGGATGCTATAAGGAAGCAGGCTGCACAAGCC
ATAAGTAGCATTCGTCCAGGTAAGTAAGCAGAATGAGAAGAAACTCTGAG
CTAGTAAGAGCCAGATGATTTCAGCAACAGACTACAGTACAGAGGTTCTT
AACCTGTGGGTACAAACCTCCATGGGGGTTGCATATCAGATATCN

TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTGTGATTTTTAACTACTCTATGCAAT
GGTTGTATGCAAACTTGAGTGGATCCTGGATACCCATATAGCTGGAAAAA
CATTGTTTCTAAGTGTTTCTGTGAGGTTATTTGTACAAGGGCTTAGCATT
TGAACAAACAGACTGAATAAAGAAGACATTTCCTCAGTGACGTGGATGAG
CATCGTGCCATCTGTTAGGGTCACAGAAAAACACAAAAAGAAAAGTTAGG
GGGAAGTCTTTGAGTGGGCTATTCTTCTTCCACCCAAGGACATCAGACCT
CCCATTTGTAGAAATTTCGACTCTGAACTACAACCATTAACTCTCCTGGC
TCTCATTTCCAGAGAGCATACCATATGACTTCTTGGTTTCCCGTAGACAC
ATAAACCTGATCTCACCTCCCCACTATAGCGGTGCACATCCCTCATCCTC
CCTATCTCTCATTGTCTCCCTTGCTCCGTCTCCTGTTGATTCTGCTTCTT
TGAAGAGTTCCAACTAATATGGCCCTTTGTAATGAAAGAACGTCAGTCAC
TCTGGATTTCACATTCAGACCATGTCCCACACCCTGTGTCCCCTAGCAGA
GTGAATAAGTTATGAAGGTGTCTCAGTTTTGGAAATAGATTTAGCCTTCT
TGGTGCACACCTTGGATTAGTAGGATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_p23.b1 MSMg01no189_p23.b1 CHROMAT_FILE:
MSMg01no189_p23.b1 PHD_FILE: MSMg01no189_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:06 2005
         (319 letters)



>mm_chr4_109856214_109856932
          Length = 719

 Score =  594 bits (307), Expect = e-174
 Identities = 313/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacttaggcagagtagaaatgtctttcttaaaaaggttgacttggaaatcaaac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattccacttaggcagagtagaaatgtctttcttaaaaaggttgacttggaaatcaaac 460

                                                                       
Query: 65  ctgaagaaccatcatgaaaagtggcagaaagagtcaccaaagaagtggacagtttctagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ctgaagaaccatcatgaaaagtggcagaaagagtcaccaaagaagtggacagtttctagg 400

                                                                       
Query: 125 agacaacaggtgaccaatggacaaaagaagagtaaggaaaaaaagtaggggacactggtg 184
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 agacaacagatgaccaatggacaaaagaagagtaaggaaaaaaagtaggggacactggtg 340

                                                                       
Query: 185 agtgtgcaaaggccagatcctaccagcttctgaggatcttcagtctgagtgtgttttgtt 244
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 339 agtgtgcaaaggccagatcctaccagcttctggggatcttcagtctgagtgtgttttgtt 280

                                                                       
Query: 245 aaagggtcactggcttcatttgcatattaacttctggaataggaaatgtgtaatgatgac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aaagggtcactggcttcatttgcatattaacttctggaataggaaatgtgtaatgatgac 220

                          
Query: 305 aaaacttggggattt 319
           |||||||||||||||
Sbjct: 219 aaaacttggggattt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no189_p23.g1 MSMg01no189_p23.g1 CHROMAT_FILE:
MSMg01no189_p23.g1 PHD_FILE: MSMg01no189_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:06 2005
         (650 letters)



>mm_chr4_109789975_109791024
          Length = 1050

 Score = 1241 bits (642), Expect = 0.0
 Identities = 648/650 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgtgatttttaactactctatgcaatggttgtatgcaaacttgagtggatcctggatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 ttgtgatttttaactactctatgcaatggttgtatgcaaacttgagtggattctggatac 260

                                                                       
Query: 61  ccatatagctggaaaaacattgtttctaagtgtttctgtgaggttatttgtacaagggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatatagctggaaaaacattgtttctaagtgtttctgtgaggttatttgtacaagggct 320

                                                                       
Query: 121 tagcatttgaacaaacagactgaataaagaagacatttcctcagtgacgtggatgagcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagcatttgaacaaacagactgaataaagaagacatttcctcagtgacgtggatgagcat 380

                                                                       
Query: 181 cgtgccatctgttagggtcacagaaaaacacaaaaagaaaagttagggggaagtctttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgtgccatctgttagggtcacagaaaaacacaaaaagaaaagttagggggaagtctttga 440

                                                                       
Query: 241 gtgggctattcttcttccacccaaggacatcagacctcccatttgtagaaatttcgactc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 gtgggctattcttcttccacccaaggacatcagacctcccatttgtagaaatttctactc 500

                                                                       
Query: 301 tgaactacaaccattaactctcctggctctcatttccagagagcataccatatgacttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaactacaaccattaactctcctggctctcatttccagagagcataccatatgacttct 560

                                                                       
Query: 361 tggtttcccgtagacacataaacctgatctcacctccccactatagcggtgcacatccct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggtttcccgtagacacataaacctgatctcacctccccactatagcggtgcacatccct 620

                                                                       
Query: 421 catcctccctatctctcattgtctcccttgctccgtctcctgttgattctgcttctttga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catcctccctatctctcattgtctcccttgctccgtctcctgttgattctgcttctttga 680

                                                                       
Query: 481 agagttccaactaatatggccctttgtaatgaaagaacgtcagtcactctggatttcaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agagttccaactaatatggccctttgtaatgaaagaacgtcagtcactctggatttcaca 740

                                                                       
Query: 541 ttcagaccatgtcccacaccctgtgtcccctagcagagtgaataagttatgaaggtgtct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttcagaccatgtcccacaccctgtgtcccctagcagagtgaataagttatgaaggtgtct 800

                                                             
Query: 601 cagttttggaaatagatttagccttcttggtgcacaccttggattagtag 650
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cagttttggaaatagatttagccttcttggtgcacaccttggattagtag 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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