BAC Information

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BAC

Clone NameMSMg01-190I06
Chromosome4 (Build37)
Map Location 44,475,579 - 44,604,458
singlet/doubletdoublet
Overlap genePax5
Upstream geneSit1, Rmrp, LOC622404, E130306D19Rik, Car9, Tpm2, Tln1, Creb3, Gba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck, Glipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38, Melk
Downstream gene5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1, Shb, LOC100040140
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190I06.T7 (MSMg01no190_i06.b1)MSMg01-190I06.TJ (MSMg01no190_i06.g1)
ACCAG380834AG380835
length719720
length of high quality
(start - end)
326 (45 - 370)284 (79 - 362)
definitionCHROMAT_FILE: MSMg01no190_i06.b1 PHD_FILE: MSMg01no190_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:47 2005CHROMAT_FILE: MSMg01no190_i06.g1 PHD_FILE: MSMg01no190_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,475,579 - 44,475,899)(44,604,179 - 44,604,458)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTAACCAGCATGCTTACACAGACACAACAAACATAAATAAAAAAA
TTAAACAACTATAAAAAATAATAACAACAACCCCTTAGGGAGTAACATCT
CAGGAACATGGGAAATAGGGTGGCCAGAAAGTATATCCCAGGGCCTATGT
ACGTCATTCATTGGTCCTATGTTTTAAGCTTCATGGGGTCCAGAGAAGAC
CTTTAAAAAGAAATCTCTACCTGTCCTCGGGCAGCAGAAGGGCCAGCATA
TATGGAGTATAATATTTCCTTTACTCATTTAAGATGTACATATTTGTTTT
TTAAAGAGAATCTTTTAAACACCGACCCATTTTATGTATGAGTACACTTT
TGCTGTTCTCAGACACACCAGAAGAGGGCATCTGATTCCATTATGGATCA
TTATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTTAACTCAGGACCTC
TGGAAGAGCAGTCAGTGTTCTTAACCACTGAGCCATCTCTTCAGCCCCCG
TACTTATTTATTTGTGTGTGTCATGCCATAGCACATGTACTATGACACAG
CACATGTGTTGAGGTTAAAGGATAACTGAACAGACTTGATTCCCCCGCCA
TGTAAGTTTCAGGGACCAAGCAGCATGTTGTGCTTATCAGCAAGTGCATT
TACCCACAGAGCCATCTCG
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCCTCCGCTTTGCAGAGCCCT
TTATGGATTTTTCTCCTCTCTCGTCCCTCTCTTTGCTTGACTGTCATGAC
TGTGTCGTGGGGGAGGGGCACAGCGAGGTGTTGATTTTAAATATCCCAGG
GACACTCTAGGGAGGAGATGGAATCCTTCCCTCACCTTCATTCTCAGAAA
GGCCAATGAAGCCTTGGGTTCTAAGAAGAGCAAGAAATTCCTCACTGGGA
CAGTTCCTAAAGCCCACACCTAATCTCTCACTGTCCACGGCCTGTCACGG
CCCTCCTGTATATTTAACCCCCGCTCCCTGCCAGAGCTCCTTCCATTCTA
AGAAGGATAAGAAGGAAAGAGTTAACTCTGGGTTTGCAGAAGGAGAAAAC
GAGCCTCAGTTTACAGAAGGGGAAAGTGAGGTTAAGTAAAGAGAAGTGTT
GGCTGGGATGGGCCACACCCAGGGATCTCTCCCAGTGTGAAGCTGCAAAG
CACCTCCTTCAAGACTTGGGAGTACCTGCCGACCTGCCTGCCAGTCCTGG
GGAGAGTCTTTGACCCCTACCATCAAGATCCTGAGAAGAATTTTGAATTT
TTCTGGGCGCCGGTTCCACCCCTAAAAATAGAGTTCTCTCCTTATAGACT
GTTATAAAGTTCTTAAGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_i06.b1 MSMg01no190_i06.b1 CHROMAT_FILE:
MSMg01no190_i06.b1 PHD_FILE: MSMg01no190_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:47 2005
         (326 letters)



>mm_chr4_44475375_44476100
          Length = 726

 Score =  621 bits (321), Expect = 0.0
 Identities = 321/321 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttaaccagcatgcttacacagacacaacaaacataaataaaaaaattaaacaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttaaccagcatgcttacacagacacaacaaacataaataaaaaaattaaacaa 264

                                                                       
Query: 65  ctataaaaaataataacaacaaccccttagggagtaacatctcaggaacatgggaaatag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctataaaaaataataacaacaaccccttagggagtaacatctcaggaacatgggaaatag 324

                                                                       
Query: 125 ggtggccagaaagtatatcccagggcctatgtacgtcattcattggtcctatgttttaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggtggccagaaagtatatcccagggcctatgtacgtcattcattggtcctatgttttaag 384

                                                                       
Query: 185 cttcatggggtccagagaagacctttaaaaagaaatctctacctgtcctcgggcagcaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttcatggggtccagagaagacctttaaaaagaaatctctacctgtcctcgggcagcaga 444

                                                                       
Query: 245 agggccagcatatatggagtataatatttcctttactcatttaagatgtacatatttgtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agggccagcatatatggagtataatatttcctttactcatttaagatgtacatatttgtt 504

                                
Query: 305 ttttaaagagaatcttttaaa 325
           |||||||||||||||||||||
Sbjct: 505 ttttaaagagaatcttttaaa 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no190_i06.g1 MSMg01no190_i06.g1 CHROMAT_FILE:
MSMg01no190_i06.g1 PHD_FILE: MSMg01no190_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:47 2005
         (284 letters)



>mm_chr4_44603979_44604662
          Length = 684

 Score =  534 bits (276), Expect = e-156
 Identities = 279/280 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggcctccgctttgcagagccctttatggatttttctcctctctcgtccctctctttgctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ggcctccgctttgcagagccctttatggatttttctcctctctcgtccctctctttgctt 421

                                                                       
Query: 61  gactgtcatgactgtgtcgtgggggaggggcacagcgaggtgttgattttaaatatccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gactgtcatgactgtgtcgtgggggaggggcacagcgaggtgttgattttaaatatccca 361

                                                                       
Query: 121 gggacactctagggaggagatggaatccttccctcaccttcattctcagaaaggccaatg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 360 gggacactctagggaggagatggaatccttccctcaccttcattctcagaaaggccaacg 301

                                                                       
Query: 181 aagccttgggttctaagaagagcaagaaattcctcactgggacagttcctaaagcccaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 aagccttgggttctaagaagagcaagaaattcctcactgggacagttcctaaagcccaca 241

                                                   
Query: 241 cctaatctctcactgtccacggcctgtcacggccctcctg 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 cctaatctctcactgtccacggcctgtcacggccctcctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)