BAC Information

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BAC

Clone NameMSMg01-192A16
Chromosome4 (Build37)
Map Location 115,996,027 - 115,996,378
singlet/doubletsinglet
Overlap geneMast2
Upstream geneCyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3
Downstream geneLOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192A16.T7 (MSMg01no192_a16.b1)MSMg01-192A16.TJ (MSMg01no192_a16.g1)
ACCAG381854AG381855
length1,2811,275
length of high quality
(start - end)
369 (28 - 396)381 (72 - 452)
definitionCHROMAT_FILE: MSMg01no192_a16.b1 PHD_FILE: MSMg01no192_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:54 2005CHROMAT_FILE: MSMg01no192_a16.g1 PHD_FILE: MSMg01no192_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGGCATTGGGCCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCA
GGACCTTTGCTTGCTTTGTTCGGCCCCGCTTGCTCCGGTCTAAAGATTTA
TTTATTACTTATATCTAAGTATACTGTAGCTGCCTTCAGATGCGCCAGAA
GAGGGCGTCAGATCTCATTACGGATGGCTGCCAGCCACCATGTGGTTGCT
GGGATTTGAACTCAGGACCTTCGGAAGAGCAGTCAGTGCTCTTAATCGCT
GAGCCATCTCTCCAGTCCCGGGAAAGAAATCTTAACACATCTTCTCTAAA
GCCTATCTTAGATGAAGGACACAGAAATACCTATAAATACCAACACACAG
CTCTAGGTGTATACCAATACACATCTCTGCACATAGAGAATGAGGCATTT
TTTATACATTTCTCAACACTGCACACTATGGAACTTCCTAGCTGCTTTTT
TTTTTTTTCCCCCCCCCCTCNCATTNTTGTGTCTACTAAAAAAAAAGGAT
GTGGAACAGAGAAAAGATTAAACAAACTAATAGCTAATAGTTACTCATAC
TTCTCATGTCCACCAACTGTTAGAAAACCAGTGTTCACTGATCCTCGTAT
GAGACAGATCTAGTAGAATTCTATTATTATGAGTTGTCCATGAGGCATAT
GAAGCTCCAGGGAATCAAATGATCTGTCTAGAATCGCACAGTTGATAAAC
GGGACACAGATGAATGCCGACCGCCTAGGTCGCTGTTACAAGGCGTCACT
GGTATATGTCACGAGAGAAAAGGATTTTTTTTTTTGTATTTCCCTCAACT
GTCATGTGTATGAAGAATAATGTACTGTTTTTTGATTCTACTTAAAGTTC
CCCCAATATTCTCTTTATTCTTCTTTCTTCTCCATCCCTTCTTTCTGTTC
TCCCTTTTTCCTATTACTTTCTGATTTAATTTTTCTCTCTCCCCTCATCC
TTTACTTTTTATTTTTTTCTATTTTATTTCCCTTCTATGTCCCATACCTC
TTTTTTCTCTATTTTTCCTCTCCTTTCTCTTTTTTCCTCTTTTTCCCATC
TTTTCCATTCGCTTTTTTTTATTTTCCTCTTCTTTTTCCTCGTTTATCTT
TTCCTCATCCATTTCTTTTCTTCCTTCCTTTTCTTTTATCCTTCTCTCTT
CATCTACTATTCTGATTTTCCTTCTCTCCTTATCTTCTTCCTCCTCTTCT
TATACACTTTCTCTTATTACTAATCTCTTACTCCCTTCTTCTCTCTTCTC
TTGTTTAATTTTCTGTTTCTTCCTCTCTTTT
NNNTTTACATTGGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTTGAAATAGAGAACTTTTTTTTAAAGA
ATTATTTGTTTGTTTTATGTATATGAGTACACTGTAGCTGTTTTCAGACA
CACCAGAAGAGGGCATCAGACCCCATTACAGATGGTTGTGAGCCATCGTG
TAGTTGCTGGGAACTGAACTTATGACCTCTGAAGAGCAGTCAGTGCTCTT
AACCACTGAGCCATCTCTCCAGCCCCATAGAGAAACTTTGAAATCCTTAA
GTTTCTATTTCTGTGTTTTATGTTGTCATTTTATTGTTACATGTCTTTTA
GCAAAACAGTAAAATCTCTTCTGAATGTAAAACAAGGCTGGATATTGGTG
TAATGGAGAAATATTTATGAAATAAAATGTATGGACAAGTGAATGATCAG
AGTTTTGTCCCCCGCCTCTCTAGCTGTTCTGGAAGTAACAGAAAAGATCA
GGCTACCTTGGGACTCAAAGGTTTGTATGTCTCTGTCTCCTCAGTACTGG
GGTTAAAGGCTTGTACCACTATGCCTGGGCTTTCATAAAACTTTAGAGGC
AAAAGAAGAGACTATGACATAGAAACATTTAAGTGTACTATTATTAATAC
GATGCTATAAATTTCTTAGGCCATTTGGATAGGCTCAAAGGATTCAAATG
GGGTCCCTATTTGTTTGACTTATTTATGTGTTTTGATCTTCAAAAGGAAT
TGAACCTTTCCTTGAATAAGCACTCTTGTTTTTTTATGGTCCTTACCTTC
TCACTTTAATCCGATTATCCCTCTGTTTGAAATCTTTCTCTAATAATTTT
TGCTTTTTACTTTTCTTTTATTCCTCTTTCTATTCCTCTTCTTCTTTTTT
ACACCCATCTATTTTCTTTTTTTTCTACTCTTCTTCTTTTCTTCAGTTTT
CAGCTCTTTTCTATTTTATATTCTCTATTCTCTTTTTCTTTCTTCTTCTC
CCTCCTCTTCTCTACCTCAACTTCTTTTCTTTCCTATCTTTTCTTTCTCC
CTATTTTCTTATATCTCTCTTTCTTCCCATTTGATTTCTGTTTCATCCTA
TTCCTTCTTTCTTTATGTCTTTTTCTTCTCTTATTNTTTTATATCTTTTT
TATTATCTCTATTCTACTTCCTTCCTTTTACCTCTTATTTATTTCTTTCT
CACTTTTCTTTTTTATCCTATCTACTCTTCTTGATATCTTCTTCGCTCTA
TCTTCTCCATTTTCTTTCTTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_a16.b1 MSMg01no192_a16.b1 CHROMAT_FILE:
MSMg01no192_a16.b1 PHD_FILE: MSMg01no192_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:54 2005
         (369 letters)



>mm_chr4_115995810_115996578
          Length = 769

 Score =  644 bits (333), Expect = 0.0
 Identities = 348/353 (98%), Gaps = 1/353 (0%)
 Strand = Plus / Plus

                                                                       
Query: 17  gaattcaggacctttgcttgctttgttcggccccgcttgctccggtctaaagatttattt 76
           ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 218 gaattcaggacctttacttgctttggtcggccccgcttgctccggtctaaagatttattt 277

                                                                       
Query: 77  attacttatatctaagtatactgtagctgccttcagatgcgccagaagagggcgtcagat 136
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 atta-ttatatctaagtatactgtagctgccttcagatgcgccagaagagggcgtcagat 336

                                                                       
Query: 137 ctcattacggatggctgccagccaccatgtggttgctgggatttgaactcaggaccttcg 196
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ctcattacggatggctgtgagccaccatgtggttgctgggatttgaactcaggaccttcg 396

                                                                       
Query: 197 gaagagcagtcagtgctcttaatcgctgagccatctctccagtcccgggaaagaaatctt 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gaagagcagtcagtgctcttaatcgctgagccatctctccagtcccgggaaagaaatctt 456

                                                                       
Query: 257 aacacatcttctctaaagcctatcttagatgaaggacacagaaatacctataaataccaa 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aacacatcttctctaaagcctatcttagatgaaggacacagaaatacctataaataccaa 516

                                                                
Query: 317 cacacagctctaggtgtataccaatacacatctctgcacatagagaatgaggc 369
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 cacacagctctaggtgtataccaatacacatctctgcacatagagaatgaggc 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)