BAC Information

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BAC

Clone NameMSMg01-192H06
Chromosome4 (Build37)
Map Location 56,120,394 - 56,268,889
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC670211, Rad23b, LOC666953, LOC100041348, Klf4
Downstream geneActl7b, Actl7a, Ikbkap, BC026590, Ctnnal1, D730040F13Rik, 6430704M03Rik, Epb4.1l4b, Ptpn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192H06.T7 (MSMg01no192_h06.b1)MSMg01-192H06.TJ (MSMg01no192_h06.g1)
ACCAG382125AG382126
length1,2291,142
length of high quality
(start - end)
420 (30 - 449)322 (69 - 390)
definitionCHROMAT_FILE: MSMg01no192_h06.b1 PHD_FILE: MSMg01no192_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:50 2005CHROMAT_FILE: MSMg01no192_h06.g1 PHD_FILE: MSMg01no192_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,120,394 - 56,120,795)(56,268,574 - 56,268,889)
sequence
NNGGACACTGCGCGCTATAGACTCACTAAGGGAGAGGATCCGCGGAATTC
ATTAATCAGAAAAAAATATCTTCAATACATTTTTAATGTGTCATGTGATT
TTCAAATGAATGCTTCTGTCTGCCCCATAAATCTTTGAAAAAGAGACCCA
GAATAACATTGTTTCATTGTTTCATATCAAATAAAGTGGAGGTCACAAAC
TCATCTTTAATAAATTCACTGTCTGAAAATAAGATATAAGGGTAATTTAC
TGTGACCCAGGTCAACATAGTCATTGAATGTTTCTCTACAGTACAGAGGA
TGAATCAGATTATAACAGAGAGAATATTTAGACCATTGTTTGCTGAAAAT
TATAATATATTACATATTAAATTTATAAAAAGTTTATGATTTAATAATAA
GCATAAAATTCCACAATATGTGCTTGAGAGGCCTAGACTCACTGATTCTT
TTTTTTCTTGCCACAGGCTGGGAGGGCAAAATCTGTTTGAAAAAAATGAC
TTTGGTGCTGATGTTGTGGAAAGTCAGATGACTGAGCAATATGGACTGTG
CATCTTTCACACATGTACCTTTTGGAGTCTAAGGAGAGCTGAGCTGATGC
CCTGTTTTCCCGAGAAGCTGGCATTTGCTCTAAAGGCATGAGAGCTTTCA
TTTGCTCCACTGTAAATCACACAGACACTGAACACTACTTTTCCTTGCTC
TTACACTCAGGGTACAGTCATGACCACTGATCTTGTCCAAAATTCCAACA
GCACCTTTTAGGAGCTCTCCTAAGTCCCCCAAAATGAGCTTTCACTGGAA
TTGTGTTCTCCAGATACCCACTGAATTTTAACCACAGTAATATTTTACCC
AAAGCAATTTTAGGGAACCAGTGAGTGAGAGTGGACTTCCCTGTGCATTT
CAGGAAAGTCCTCCAAGTTGAACCTAGCACTAAAAATCCCCAATCATTTT
TTTTAATAAAAAAACTGGTTCCCTCCACTTGTAATTTCTAAAAATAATAT
ACCTTTTTTATTGATTATTAATTCTCTTTCTCCCTCTTCTTTCTTTTATC
CCACTCCTACTGCCCCTTCTCCATTTTTAACATTCCCTTCTCCTCTTTCT
TACTCTTCTTCCATCTCTTATTCTTCACTTATTTTTTATCTCTTTTTTTC
TATCTTTGTTTACTTTCTCTTATATTCCTCTTATCCTTATTTTTCACTCT
TNTTCTTTCTTTCCTTCTCCTCTATATTC
NNCCCCGGACGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCCTTAGTGGCTCCTGCCAATTCCAAGGCCCA
CTTCCCTCGGCCTCTGCCACGGCAAGCCACTCCTCTTATCTCTTCAGGTC
ATCCTCACAGCTCCCAGATGGTATGGCTCGCCTTGCCTTTGTCCTTGATG
CGACTTCTGCCTCGTTCCTGTTCTTCCTCTACCTTCTCTCTGCTCTGAGA
TAGCCCTTCACTGTGAGCCTCTGGGAGAAGGTTTTTCCTTCCCTCGTCCC
TTGTCCCTCTGCTTCCCTCTCTTTTGTCCTGTTGCTTGCCCACAGGTTGA
ATCTTGTTGCCTGATGAATCTCTTCCCAGGCTTCAGGGCATTTTTTTTTG
CCANCCCANNCNNCCNGGCNCNNGGGAGCCAAAAGAAAAAGTTTTTGTGC
TCCCCCCCCCCCAAGAAAGNCCCCCCCCCCAAACGAGGAAGGGGGGGTNN
NNNNNNNNNNNNNTNNNNNNNNNNNNTCCTNNNNTNNTTGNNTGNTGGTT
GNNNGGNGNNNCNCTNTCCTTGTTCTGTGGCTCCTCCNGCTGCCCGGGTN
GCTTTGTTCCCCCNGCCCTTTTCTGTGGGTCTCTCCTCCTCTTTCCCTTT
TTGCTGTGGCNGCCCTGGGGGCTGGGGCCCGGCCNCCCGGCCCCCCCGGT
TGTGGCTCCGGGGTCTTCGCGGGCCCCTCTCTCCGGGGCCGCCCTTCGCG
CGGTGTTTTTTTTTTTTTCGGGGGCCGGCCCCCGGGNTCCGGGTTCGGGG
GCCGGCTTCTTGTCCCCGCGCGCGCCCGGCGGTGGTTCTTTCTCCCCGGC
GCCGCCGGCCCCGGGCGGGCCCTCGCTCCCGCGCTTCGCGCGGGGCCCTC
CCCCCCCGGCGCTTGGCCCGCTCGTCGTTTGCCTTGCGTTCCCGTCCCGG
GCCGGCGTCCTCCCTCCGCCTCGGCTTCCGCGGCTCTGGCTCGCTTGCGT
TCCGGGGCCGCCCCCCGCCCCCTCTGCCTCCTGCTTGTTTGGCGTCCTCC
TTCTCTCCCCCTCGTTCCTCTCCCCTGCTCGGNCCGCTTCCTGCGCTTTC
CCGGCTTGCGCGTCCCGCTGTGTCGCGCGCCCGCTCTGTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_h06.b1 MSMg01no192_h06.b1 CHROMAT_FILE:
MSMg01no192_h06.b1 PHD_FILE: MSMg01no192_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:50 2005
         (420 letters)



>mm_chr4_56120179_56120999
          Length = 821

 Score =  731 bits (378), Expect = 0.0
 Identities = 396/402 (98%), Gaps = 1/402 (0%)
 Strand = Plus / Plus

                                                                       
Query: 16  gaattc-attaatcagaaaaaaatatcttcaatacatttttaatgtgtcatgtgattttc 74
           |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaattcaattaatcaggaaaaaatatcttcaatacatttttaatgtgtcatgtgattttc 275

                                                                       
Query: 75  aaatgaatgcttctgtctgccccataaatctttgaaaaagagacccagaataacattgtt 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaatgaatgcttctgtctgccccataaatctttgaaaaagagacccagaataacattgtt 335

                                                                       
Query: 135 tcattgtttcatatcaaataaagtggaggtcacaaactcatctttaataaattcactgtc 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tcattgtttcatatcaaataaagtggaggtcacaaactcatctttaataaattcactgtc 395

                                                                       
Query: 195 tgaaaataagatataagggtaatttactgtgacccaggtcaacatagtcattgaatgttt 254
           |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 396 tgaaaataagatataagggtaatttactgtgacccaggtcaacatagtcattaaacgttt 455

                                                                       
Query: 255 ctctacagtacagaggatgaatcagattataacagagagaatatttagaccattgtttgc 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ctctacagtacagaggatgaatcagattataacagagagaatatttagaccattgtttgc 515

                                                                       
Query: 315 tgaaaattataatatattacatattaaatttataaaaagtttatgatttaataataagca 374
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 516 tgaaaattataatatattacatattaaatttataaaaagttcatgatttaataaaaagca 575

                                                     
Query: 375 taaaattccacaatatgtgcttgagaggcctagactcactga 416
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 taaaattccacaatatgtgcttgagaggcctagactcactga 617


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 821
Length adjustment: 9
Effective length of query: 411
Effective length of database: 812
Effective search space:   333732
Effective search space used:   333732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no192_h06.g1 MSMg01no192_h06.g1 CHROMAT_FILE:
MSMg01no192_h06.g1 PHD_FILE: MSMg01no192_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:50 2005
         (322 letters)



>mm_chr4_56268374_56269093
          Length = 720

 Score =  584 bits (302), Expect = e-171
 Identities = 314/318 (98%), Gaps = 2/318 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccttagtggctcctgccaattccaaggcccacttccctcggcctctgccacggcaagcc 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tccttagtagctcctgccaattccaaggcccacttccctcggcctctgccacggcaagcc 457

                                                                       
Query: 61  actcctcttatctcttcaggtcatcctcacagctcccagatggtatggctcgccttgcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 actcctcttatctcttcaggtcatcctcacagctcccagatggtatggctcgccttgcct 397

                                                                       
Query: 121 ttgtccttgatgcgacttctgcctcgttcctgttcttcctctaccttctctctgctctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ttgtccttgatgcgacttctgcctcgttcctgttcttcctctaccttctctctgctctga 337

                                                                       
Query: 181 gatagcccttcactgtgagcctctgggagaaggtttttccttccctcgtcccttgtccct 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 336 gatagcccttcactgtgagcctctgggagaagg-ttttccttccctcgtcccttgtccct 278

                                                                       
Query: 241 ctgcttccctctcttttgtcctgttgcttgcccacaggttgaatcttgttgcctgatgaa 300
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 277 ctgcttccctctcttctgtcctgttgcttgcccacaggttgaatcttgttgcct-atgaa 219

                             
Query: 301 tctcttcccaggcttcag 318
           ||||||||||||||||||
Sbjct: 218 tctcttcccaggcttcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 720
Length adjustment: 9
Effective length of query: 313
Effective length of database: 711
Effective search space:   222543
Effective search space used:   222543
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)