BAC Information

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BAC

Clone NameMSMg01-193A05
Chromosome4 (Build37)
Map Location 17,777,301 - 17,777,706
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040154, LOC667212, LOC100040173
Downstream geneMmp16, LOC667251
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-193A05.T7 (MSMg01no193_a05.b1)MSMg01-193A05.TJ (MSMg01no193_a05.g1)
ACCAG382496AG382497
length1,2221,176
length of high quality
(start - end)
410 (46 - 455)380 (71 - 450)
definitionCHROMAT_FILE: MSMg01no193_a05.b1 PHD_FILE: MSMg01no193_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:11 2005CHROMAT_FILE: MSMg01no193_a05.g1 PHD_FILE: MSMg01no193_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGCGGACACTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGATATAGTTCAGAGTGAAGAATATTAATTATCACAACACTGTA
AGAATGCAGTATGATTTCCCTCTACAATGTCTGGAGAAAAAGTCACAAAG
TGATTCTCATAGAATCTTTGAAACTAGGAAGATAAGTAAAGGAAAGACAT
GTCAGACATGGTGTGCAGTGAAGCAATGAATATGTGAGCAGGCATCAGTA
GAAGTACGGACACTGTGTAAAGGGTAAAGGCTGGAGCTTGTTTACCAGTC
AAGGTTAGAGATCACTGGGATGAGGAACAAGAACAATGCATGCTAGACTC
AGCCTTATGCTTTACTCTGAAGAAATTCTTAGAAAGAGGTAATTGAGTTT
GTTTTGCCTTTATGAAGTTTGTGAACTATGGAAGCTTACCTTCTCAAAGT
TCTTTTTTTTTGCGCCCCCTCAAATATCTTTGTAGACATTTAAACAAGGG
TACCTAATAAGTCTGGTATGCATTCAGCTGAAACCCTGAGGACAGGGAAA
TGAATTTATTGTCAGGGATTTATCATGCCATTTCTAGCCTATTGTCTATG
TTTCCTTTTAAGGTCCAGCGATATAGGAAACTCTCTGTTTTCATATCTAC
TAATAACATGATTTTAGTTAGTGCCCTTCTCAGAGAAGATTTTAACCTGT
CTATAGTAAATTAAAATACTATCATCTTTCCCTTTAGGGTATAAATGAAA
TCTTCTGCTGTAATTCCTGCCTTTTGCTGTGTGTGCTTTTCTATCAGATG
CCCTCTTTCTTATAGGAATTTCAGAAAACTAATAATCCCATAATTGCCTG
TTCCTAATGAAAACAGAGGAGAGGAAACTAATATGAAAGCTAAGAAGAAA
GTGTATTTGCCCCCGCCAAAGGCCTAAGGCAATTCATAAAATGGTCTATG
GGAGTTTTGGGGACTGAAAAAGCCAGTTATACCTATTTCCTTTCTGAAAA
CATGGTAGTTTTTTTAAAGGAGCCCTTCCCTCTACCTGTTGTTATTTGAA
GAACTCTTATTTTTTCTCATATATCCTACCTCACACTTTTTTTTCTCTCT
CTCTTATACCCTAAACTTTTTACTATACTTTCTACTACCTTTTCTTCTCG
TTCTATATATTTCCTTCTTCTTTCTCTCATCTATCTCTTTTCTTTCCTCC
TTTCCTTCCTCCATATACTTTG
NNNCCATGAGGTGTAGCTGGGGCGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGTGCTGCCCCTGGTATTACACTATCTCTT
TGAGTAAAAGTTAGGTCACTGCCCTTCACAGGAATTTACCATCACTAAGG
AAGAAAGAAGTTTCTGACTGTAGGAGAAACCAGAATAGATATTTAGAATT
ATAACTGAGTTACACCTATATACAGGAATTTACAATGGTTTAGGAAGTAG
ATCGGGCTGTGGTTTTAGAGTATTTCATTATTCATGAGATGGTTAGCTAG
AACAGAACTCCCTAGTTAGAACCATGACTTGGGTGTGAAAGCCCTTGCCC
TAGGAGTGAAAAGTTCTCACACCTGGCTTCTAAGACTATAGCTGACCTTA
GATAGGGCTGCCTCTGTCTCAGTTATTTTATTGCCCAGTTCCTGCCAGTC
TTTGTGTTTTCATTCCTCTGTTCTGTGTAAGAGTCATTAAGAAGGGGGTT
ACCTCATTTGTACCTTGTGGGTATGTGACCCAACTACCTTGTTGTCTTCT
GCATAAAAAGTCTGATGTTCGATTTGAAAAATTACATTCAGATTCCACAC
AAACTCTCCTGTGTGCGTCTGTCTGTCATTCATCCACGCTTTGCCCACCC
GCGTCGAGAGACCCCATTCCACGCAGACACAGGGACCCAGAGGGTCTGCG
GCACTTGGCAGTATCACGAGGATTGAACACCCCTCTTTAATATATGTTGG
TGATTTTTAAAGAATANAATTGCAGTTGTGTGAAGAATTTTATTCTATAT
TCCGTATGAAATCCGTACCTGTTAACAGTAATTAAGATTAGTTGGTGAAA
AAGGTTTCCTTCCTTGGTCTGGTTACTCCGGTTCATTTCCTAAACCTCCT
TCCTGGGAAAAAAGACACCCCCTTTGAAAAAATGTTTCTTTCTCCCTCAT
TGTTTCCCCTTTTTATTTCTGTTCATGCCCTCCCCACGATTACTTTTTAT
CCCTCCTTACCTTTTCCATTAATTAACCCTTTATTTATTTCTTTTCTCCC
TAATCATTTCTTCCCTTTCTTCTTCTTCTTTTTCTCTCTCCCTCCACTAA
CATTGCTTTTTTTCTCTCTCCATCTCTCCAATACTGTTTTTTCTCTTTTA
AATTCTCCCTTTCTCTTATTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no193_a05.b1 MSMg01no193_a05.b1 CHROMAT_FILE:
MSMg01no193_a05.b1 PHD_FILE: MSMg01no193_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:11 2005
         (410 letters)



>mm_chr4_17777098_17777907
          Length = 810

 Score =  723 bits (374), Expect = 0.0
 Identities = 398/406 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaggatatagttcagagtgaagaatattaattatcacaacactgtaagaatgca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ggaattcaggatatagttcagagtgaagaatattaattatcacaacactgtaagaatgca 550

                                                                       
Query: 64  gtatgatttccctctacaatgtctggagaaaaagtcacaaagtgattctcatagaatctt 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 549 gtatgatttccctctacaatgtctggagaaaaagtcacaaagtgattctcatagaaactt 490

                                                                       
Query: 124 tgaaactaggaagataagtaaaggaaagacatgtcagacatggtgtgcagtgaagcaatg 183
           ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 489 tgaaactaggaagataagtaaaggaaagacatgtcagacctgttgtgcagtgaagcaatg 430

                                                                       
Query: 184 aatatgtgagcaggcatcagtagaagtacggacactgtgtaaagggtaaaggctggagct 243
           ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| 
Sbjct: 429 aatatgtgagcaggcatcagtagaagtacagacattgtgtaaagggtaaaggctggagcg 370

                                                                       
Query: 244 tgtttaccagtcaaggttagagatcactgggatgaggaacaagaacaatgcatgctagac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tgtttaccagtcaaggttagagatcactgggatgaggaacaagaacaatgcatgctagac 310

                                                                       
Query: 304 tcagccttatgctttactctgaagaaattcttagaaagaggtaattgagtttgttttgcc 363
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 309 tcagccttatgctttactctgaagaaattcttagaaagaggtcattgagtttgttttgcc 250

                                                         
Query: 364 tttatgaagtttgtgaactatggaagcttaccttctcaaagttctt 409
           ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 249 tttatgaagtttgtgaactatggaaacttaccttctcaaagttctt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)