BAC Information

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BAC

Clone NameMSMg01-193E11
Chromosome4 (Build37)
Map Location 17,755,034 - 17,755,431
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040154, LOC667212, LOC100040173
Downstream geneMmp16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-193E11.T7 (MSMg01no193_e11.b1)MSMg01-193E11.TJ (MSMg01no193_e11.g1)
ACCAG382649AG382650
length1,2441,227
length of high quality
(start - end)
424 (29 - 452)328 (71 - 398)
definitionCHROMAT_FILE: MSMg01no193_e11.b1 PHD_FILE: MSMg01no193_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:37 2005CHROMAT_FILE: MSMg01no193_e11.g1 PHD_FILE: MSMg01no193_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGGTCAGTGGGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTC
AAGTAAACAGACATCAGGAATGGATGGAGGGAGTAACTTGGTTGGGGATG
GGACTTTGTGCTTTATGTCCACTCTTTATGTCTTTTACATCCAGTCGAAT
ATCTTAAATCCCATATTTATTAAGAGAGAAAAGGATTATTTTAGGTTAAT
TAGATTAATTCTGATAATTTAAAATTTTTCAAATGCTACAACATTGATAC
AATTCCAATTTCCATATTTACTGAGTAGATAGAGTGCTCTTTATGAACTC
TTAACTCACAGAGTCTGAAGTTAGAACCCTTCTCCAGACAACCACCTCAG
TGAGAGATCTCTAGCATCTCTAGTATCTTCTTATGGAAAAGTTATGTTTT
TCACAACAAGGGAAATAATGAGATAGATGATACTTCTACAGTATTTTTTT
TGCCCCCCCCCTATGAAGTGCAGCCTCTGTAAAAAAAGAGGGGGGGTNCA
TCCTANATTGTGATTAATGTTAAGGCCCAATAAGGTACATATATCAATGA
AAAACATAACTTTGAAAAGTTTTAAATAGAGATTAACTATCTTAGGCTAG
TAGATTATAATAACAATGATCAAATTTTAATGCTATTAACACATTAAAAC
TATAAGCTATAATTCACACTGAATATTTTACATACAATTAAAATATAGAA
TTTTAGTTCAAATTCACAAACACTTAAATAAATATGCTGTAATAAAGTGA
TTTTAAATTAAGAAGAATTAAGACATTATAGGAAAGTTTGAAACCCTGAA
TTAAATTTGAAGTTCTTACATGTTTTTAATATCCCTCTTGAGTTTCTTTA
CTTTTTGGTTCACTTGTAGGATTATAAGCTGAATGTTCCTGGTAAGGGGA
AATTGGTCTTAATATTTCCTGCTTCCACTATGCTTATTAATGTGGTAAAT
TTTTGTATTCTTGTCTTCCTATCCCCAGATTTGTCTCACTCTAGTCTTTT
GTCTTCATTTATCAACATTTCCTTTATCATTGGTCAGGGATACAATTGTT
GTTAAGATGTACCTTATTTAGTATTTCTTTTGTCCTTACGTGCATTGCTT
TTAGGTTTTTCTATATTTTCTCTATTCTCTTCCTTCCTGATTTCCGATTT
ACCTATTTCCTATTTCTTTCCTTCTTCTGTTACCTCTTTACTTCCTATTT
CCTTTCTTTTATTTTTTATATCATTCCATTTCACTCATTACCAT
NNCCACACACACGGAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCAACTGAGGAATACCAAATGGTTGAGAAA
AACCTGAAAAAATGTTCACCATCCTGAATCATCAAGAAAATGCAAATCAA
AACAACCCTGAGATTCCACCTCACACCATTCACCAATGGATAAAAACAAA
AATTCAGGTGACAGCAGATGCTGGCGAGAATGTGGAGAAAGAGGAACATT
CCTCCATTGTTGGTGGAATTGCAAGCATGTACAAATACTCTGGAAATCAG
TCTGGTGGTTCCTCAGAAACTTGGACATAGTACTACCGAAGGATCCCGCA
ATACCTCTCCTGGGCATATATCCAAAATATGTTCCAACCGGTAAGAAGGA
TTTTTGGTCAATTATATTCAGAGCAGCCTTATTTGTAATAGCCAGAATTT
TTTTTTTTTCCCCCCCCCCCCNNAANAGACCTCCCCCCACAAAAAAAGGG
GGGGGTTTTTTTTNTTTTTTTTCTTCTCTNNTTTTTTTNTTGTTTGNTTT
TTTTTTTTTTCTNNTTCTTTTGCCTGGCCCTGCTGGCCCTCTTCCTGCTC
GCTTTCTCTCCTTCCCCTTCTCCCTCCCCTGCTTNTCCCTCCTTGCTTTC
TCTTCTCTGTTCCTTGTTCTTTCCCCCCCTTCCCCCTCTTCCCTCCTTCT
CTCTTTTTTTTGCTTCTCTCTTTTTCTCTTTCTTCCCCTCCCCTCGTCCC
CTTTTCCCCTTCTCCCTCCTCTCCCCTTTTCCCTTCTGCCCGCCTCTTCC
TCTCCCTCCTTCGCTTCTTCTTTCTCTCTCTCCTCCTCTCTTCCCTCCCC
TCTCCTTTCCTTTTCTTCCCTCGCCTTCCTTCTCTTCTTCCCCCTTTTCT
CTTCCCCTCCTCTTCCTTCCCCCCTCTCTTCTCCTTTTTTCTTTTCTCTT
TTTCTCTTTTCCCTCTTCTCCTTCTTCTTTCCCCTTCTCTTTCTTTTCTT
CCTTTCTTCTTCTCCCTTCTTCTCGCTTCTCTCTTTCTCTCTTCTTTTCC
TTCCTCTCTCTTTTTCTCTCTTCTCCTTTTCCTCTTTTTCCTTTTCCCTC
TCCTCCTTTTTTTTCCTTCTTCTTTCTCTCTCCTCCCTCTCCCTCCTCCC
CTTTCCTCCTTTTCCTTCTCTCCTTCTCCTCCTTCTTCTCTCCTCCGCTC
CTCCTTCTCCTCTTTCTCTCTCTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no193_e11.b1 MSMg01no193_e11.b1 CHROMAT_FILE:
MSMg01no193_e11.b1 PHD_FILE: MSMg01no193_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:37 2005
         (424 letters)



>mm_chr4_17754818_17755643
          Length = 826

 Score =  692 bits (358), Expect = 0.0
 Identities = 388/398 (97%), Gaps = 2/398 (0%)
 Strand = Plus / Plus

                                                                       
Query: 17  gaattcaa-gtaaa-cagacatcaggaatggatggagggagtaacttggttggggatggg 74
           |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gaattcaaagtaaaacagacatcaggaatggatggagggagtaacttggttggggatggg 276

                                                                       
Query: 75  actttgtgctttatgtccactctttatgtcttttacatccagtcgaatatcttaaatccc 134
           |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 277 actttgtgctttatgtacactctttatgtctttcacatccagtcgaatatcttaaatccc 336

                                                                       
Query: 135 atatttattaagagagaaaaggattattttaggttaattagattaattctgataatttaa 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 atatttattaagagagaaaaggattattttaggttaattagattaattctgataatttaa 396

                                                                       
Query: 195 aatttttcaaatgctacaacattgatacaattccaatttccatatttactgagtagatag 254
           || ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 397 aaattttcaaatactacaacattgatacaattccaatttccatatttgctgagtagatag 456

                                                                       
Query: 255 agtgctctttatgaactcttaactcacagagtctgaagttagaacccttctccagacaac 314
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 457 agtgctctttatgaactcttaactcagagagtctgaagttagaacccttctccagacaac 516

                                                                       
Query: 315 cacctcagtgagagatctctagcatctctagtatcttcttatggaaaagttatgtttttc 374
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 517 cacctcagtgagagatctctagcatctctagtatcttcttatggaaaagttatgcttttc 576

                                                 
Query: 375 acaacaagggaaataatgagatagatgatacttctaca 412
           |||||||| |||||||||||||||||||||||||||||
Sbjct: 577 acaacaagagaaataatgagatagatgatacttctaca 614


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 826
Length adjustment: 9
Effective length of query: 415
Effective length of database: 817
Effective search space:   339055
Effective search space used:   339055
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)