Query= MSMg01no193_p16.b1 MSMg01no193_p16.b1 CHROMAT_FILE:
MSMg01no193_p16.b1 PHD_FILE: MSMg01no193_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:43 2005
(685 letters)
>mm_chr4_35875191_35876272
Length = 1082
Score = 1149 bits (594), Expect = 0.0
Identities = 660/687 (96%), Gaps = 9/687 (1%)
Strand = Plus / Minus
Query: 5 gaattcatgagtgccaacgagtagagactgggcttctgacaaagacattataaattaaat 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 gaattcatgagtgccaatgagtagagactgggcttctgacaaagacattataaattaaat 725
Query: 65 ggtgctaaacaggtacaaacacacatgctagtgcaatagagactccactccaaggtggag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 ggtgctaaacaggtacaaacacacatgctagtgcaatagagactccactccaaggtggag 665
Query: 125 ggaggatgccttgactgcataggaaccaggctgctctcacaacagaggaagaggtgggcc 184
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 664 ggaggatgccttgactgcataggaatgaggctgctctcacaacagaggaagaggtgggcc 605
Query: 185 ttttattcctgtactgatatttccaggataagcctagaaatatttcaagttctttagata 244
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 604 ttttattcctgtactgatatttctaggataagcctagaaatatttcaaggtctttagata 545
Query: 245 tcattttgaacatttcttcatacaatgtttgcttatagcaaaagctgtccacttattcta 304
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 544 acattttgaacatttcttcatac---gtttgcttatagcaaaagctgtccacttattcta 488
Query: 305 gtacctgctagcatgtattctctcagagctcctattctgccctaacatcttggtcctgta 364
|||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 487 gtacctgctagcatttattctctcagagctcccattctgcccaaacatcttggtcctgta 428
Query: 365 gtaaagatgagagctgtagcttttcagagaatacatgattaggggtggaataaagtgttc 424
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 427 gtaaagatgagagctgtagctgttcagataatacatgattaggggtggaataaagtgttc 368
Query: 425 atgctttaatgagtaacatgctagagggccttctgcctttgtgtactattctctcaactc 484
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 367 atgctttaatgagtaacatgctagagggccttctgcctttgtgtaccattctctcaactc 308
Query: 485 cattactttttaagtcattaaggaaaagcattctggtgtttatgataacctgttttctgg 544
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 307 tattactttttaagtcattaaggaaaagcattctggtgtttatgataacctattttctgg 248
Query: 545 gctgcctaagattagtcaagagtgatagagctacag------aaaaaaatgaacactgta 598
|||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 247 gctgccaaagattagtcaagagtgatagagctacagaaaaaaaaaaaaaagaacactgta 188
Query: 599 tacttaactgagaaacaactcactagttaagttcctggggatagggttttatttctccca 658
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 187 tacttaactgagaaacaactcactagttatgttcctggggatagggttttatttctccca 128
Query: 659 tagtgacttanaagcacatgccttctg 685
|||||||||| ||||||||||||||||
Sbjct: 127 tagtgacttaaaagcacatgccttctg 101
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1082
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1072
Effective search space: 723600
Effective search space used: 723600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no193_p16.g1 MSMg01no193_p16.g1 CHROMAT_FILE:
MSMg01no193_p16.g1 PHD_FILE: MSMg01no193_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:43 2005
(607 letters)
>mm_chr4_35807503_35808508
Length = 1006
Score = 1135 bits (587), Expect = 0.0
Identities = 602/607 (99%), Gaps = 1/607 (0%)
Strand = Plus / Plus
Query: 1 ctcgacagtgaaaatattcaggaactgaccttatgatgtgtgtcagacaccaatctgaca 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 ctcgacagtgaaaatattcaggaactgaccttatgatgtgtgtcagacag-aatctgaca 259
Query: 61 ggagtcaaggaccaattaagctcctgcaatccaatgacacaatgggctccttgatcattg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ggagtcaaggaccaattaagctcctgcaatccaatgacacaatgggctccttgatcattg 319
Query: 121 agaccttcttaattagatctaatctttattcctggcactgacttggacacttttaacctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agaccttcttaattagatctaatctttattcctggcactgacttggacacttttaacctc 379
Query: 181 tgatttaataattttagttttgaagtttaccttgctgccagaagtagaattggcattcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgatttaataattttagttttgaagtttaccttgctgccagaagtagaattggcattcct 439
Query: 241 gtagcactttggattttgaaataggaaggtggaggaagaacagaacagaaaaatcacgtg 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 440 gtagcactttggattttgaaataggaagttggaggaagaacagaacagaaaaatcacgtg 499
Query: 301 ttctctttgacaaaccttcctaagacaggaaaagcattagggatcacctttaagagttgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttctctttgacaaaccttcctaagacaggaaaagcattagggatcacctttaagagttgt 559
Query: 361 tgtccagtgatttcactgcaatttgacaattcagatctcttcacctgtctgtgcccaaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgtccagtgatttcactgcaatttgacaattcagatctcttcacctgtctgtgcccaaac 619
Query: 421 tgtaggaaacactttaatgtcatttcaagatgccagatttcaaaatccagttgctgattg 480
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgtaggaaatactttaatgtcatttcaagatgccagatttcaaaatccagttgctgattg 679
Query: 481 tcttgtttagggacaaagtctccacgactgtctcatcacagacccaactcacatcataat 540
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tcttgtttagggacgaagtctccacgactgtctcatcacagacccaactcacatcataat 739
Query: 541 agttttcattcccacagagaggtgagtatgcttttttcatgatacattgtgggtacaaca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 agttttcattcccacagagaggtgagtatgcttttttcatgatacattgtgggtacaaca 799
Query: 601 tcttgaa 607
|||||||
Sbjct: 800 tcttgaa 806
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1006
Length adjustment: 10
Effective length of query: 597
Effective length of database: 996
Effective search space: 594612
Effective search space used: 594612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
