Query= MSMg01no194_c09.b1 MSMg01no194_c09.b1 CHROMAT_FILE:
MSMg01no194_c09.b1 PHD_FILE: MSMg01no194_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:57 2005
(674 letters)
>mm_chr4_27385000_27386071
Length = 1072
Score = 1243 bits (643), Expect = 0.0
Identities = 661/669 (98%), Gaps = 6/669 (0%)
Strand = Plus / Plus
Query: 8 aatttgatcaaatga--ttccgtgtttcagtataacttttctccagcatttctatttctt 65
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 208 aatttgatcaaatgagttt--gtgtttcagtataacttttctccagcatttctatttctt 265
Query: 66 tggtaaattacagtttcataccacaacacactttcttatttctttcatctagctgtgtgt 125
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 266 tggtaaattacagtttcataccacaacacactttcttatttctttcatctggctgtgtgt 325
Query: 126 ttagaacactttaagatcctctgagttattttactgtatccataatcatcttttatattt 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttagaacactttaagatcctctgagttattttactgtatccataatcatcttttatattt 385
Query: 186 ccaccttaacattattttcaatcaggagtaattagtatggtcttggttattttggaagaa 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ccaccttaacattattttcaatcaggagtaattagtatggtcttggttattttggaagaa 445
Query: 246 cataagtaatattggttttccatgttacttatgtgtgctgggatctgcccctgttagttt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 cataagtaatattggttttccatgttacttatgtgtgctgggatctgcccctgttagttt 505
Query: 306 agatcactgagtaagattccctgatttaggttgctttccttctttcagtgaacaaaaggt 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 agatcactgagtaagattccctgatttaggttgctttccttctttcagtgaacaaaaggt 565
Query: 366 gaagagttactaagaattttatacaattttgatgagtttttaccttgtaaaatggtgttc 425
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gaag--ttactaagaattttatacaattttgatgagtttttaccttgtaaaatggtgttc 623
Query: 426 aagcactaggttgaatcttccatgcaccttagtggcgggataccatttgcagaaacagta 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aagcactaggttgaatcttccatgcaccttagtggcgggataccatttgcagaaacagta 683
Query: 486 actatccagtagctaacttacttcagctttagagtagcaagaaactacaaaatagacata 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 actatccagtagctaacttacttcagctttagagtagcaagaaactacaaaatagacata 743
Query: 546 agtcaagtaccagttagtttagggagtaagtggaccctaaagaagttgtatatattaata 605
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 744 agtcaagtaccagttagtttagggagtaaatggaccctaaagaagttgtatatattaata 803
Query: 606 tgctagtatgaatgtgaataagaaaatttaattagtaagggtaactctattgatagttgt 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tgctagtatgaatgtgaataagaaaatttaattagtaagggtaactctattgatagttgt 863
Query: 666 tatgtgata 674
|||||||||
Sbjct: 864 tatgtgata 872
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1072
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1062
Effective search space: 705168
Effective search space used: 705168
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no194_c09.g1 MSMg01no194_c09.g1 CHROMAT_FILE:
MSMg01no194_c09.g1 PHD_FILE: MSMg01no194_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:57 2005
(417 letters)
>mm_chr4_27397431_27398251
Length = 821
Score = 779 bits (403), Expect = 0.0
Identities = 415/421 (98%), Gaps = 6/421 (1%)
Strand = Plus / Minus
Query: 1 aacactaaaagacaattggaactttctagtctgagttcaaaattcattaaaaaagggtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aacactaaaagacaattggaactttctagtctgagttcaaaattcattaaaaaagggtaa 561
Query: 61 acaaatattgtttataaaagtccaaat-agatatactaacactgattttcttta----tt 115
||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||
Sbjct: 560 acaaatattgtttataaaagtcc-aatgagatatactaacactgattttctttattactt 502
Query: 116 atgagaaataaagataactacacaaaaaataaaactactgaatgagctttagcctatatt 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgagaaataaagataactacacaaaaaataaaactactgaatgagctttagcctatatt 442
Query: 176 gaatagtagagccataatttaatgacagaggggatctagtaattctcttctgatgtttgg 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaatagtagagccataatttaatgacagaggggatctagtaattctcttctgatgtttgg 382
Query: 236 ggtcatatttacttctgttagtgatttgtctgcatatatcagctggaactctgggaaaca 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtcatatttacttctgttagtgatttgtctgcatatatcagctggaactctgggaaaca 322
Query: 296 agatttgtacagaatctcagcaaagagccatctaagaagtatgtaagtagctataaggat 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatttgtacagaatctcagcaaagagccatctaagaagtatgtaagtagctataaggat 262
Query: 356 agggaccatttactcacaattacatactaagcttctaacatagacagtaatggataggag 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggaccatttactcacaattacatactaagcttctaacatagacagtaatggataggag 202
Query: 416 a 416
|
Sbjct: 201 a 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 821
Length adjustment: 9
Effective length of query: 408
Effective length of database: 812
Effective search space: 331296
Effective search space used: 331296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
