BAC Information

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BAC

Clone NameMSMg01-194D09
Chromosome4 (Build37)
Map Location 134,734,772 - 134,899,200
singlet/doubletdoublet
Overlap geneClic4, LOC676072, Srrm1
Upstream geneCcdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3
Downstream geneA330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-194D09.T7 (MSMg01no194_d09.b1)MSMg01-194D09.TJ (MSMg01no194_d09.g1)
ACCAG383218AG383219
length716790
length of high quality
(start - end)		670 (37 - 706)235 (57 - 291)
definitionCHROMAT_FILE: MSMg01no194_d09.b1 PHD_FILE: MSMg01no194_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:01 2005CHROMAT_FILE: MSMg01no194_d09.g1 PHD_FILE: MSMg01no194_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,898,535 - 134,899,200)(134,734,772 - 134,735,003)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATT
ATTCTCTTCATTTTTAGGACTTTAAAAAATAAATCTGTGGGGATTTGTAA
TGAAAAGAGGAGGTAATATTTTTGTTGTTTGTGCTGAGTTGGAAAACCTA
GAGAAGCAGTGCCTCTAAAGGCTGAGTGTGCCCCGCCATGCTGGGCAGCT
TTACTACAAGTTTTAAAAAATAATCAATACTTTTGAATTAGGTGCACTTC
AGCTTAAAAAGAAAGAGGGGCCCCCACCAATAAAAAGTTGGCATTTCTCT
TTTCTTGTGAAGAACATACTACTTGCATTGCACTATCTATCCATTTTCTG
CATCTTCGGGCTCTGCCTGGTCATCTCTGATACGAGCTACTTGTACTTAG
TCCCTGTATATTGGTAGGGTTGATTGACTGTTGAGAAAGTGGTTGCTTTA
AGCACTTTGATCTCAGGCTCTGGTCTTTGAATGATCGCCGGGATAGTTGA
GAACCATGCCTCCAGCCTAACTCCGTGCCTCCCCTTCTAACTGGTCCTTG
AGGCTGTCACCTCTGTTTGCTTGTCCTTCTAGTTCTCTCTGGCCTTTTCC
TTCTCAAGTAGATGAAATGGATATCTTGTTTCCATGTGAAACTTCTCAGA
TACAGATCACAGTGGGTAACTTACAAGATTAATCCTTGATTTTCCCGTTG
TCTACTCTAAACCACA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTAACCACAACTAATGCAAGACCTGTCCCCAGGTACACCCAGGGT
GGGTCACCCAGCAGGACCTCTCCCTGGGTTGGAACAGGAAACTGTCTTCA
CAGCCCACATGCTTCTACTTGGTTTATCTGAGGGTGGACCTGTAGGTGGC
CGCTACAACTGAAGAGCAAAACCCCTGACTGTATTTAACTCCTGTCACCT
GCATCCCACTTGTCAAAAGGATACAGACCAAGAGATGTGCAGCCCGCCCT
TTTTTTTCCATTTAATACCCAATATAAAAAACAATTTTTTTTTTTTTTTC
CCAAACAAGACCCCCTTTANTTTATTTTATTTTTTTTTCCTTTTCTTTTC
CACTCACAAAAAAAAAAAAAATTATCCTGCGTGTTGGCCGGGTCCTTACT
CTCCTACCCCTTTATTCTATCCTCTTTTTTACACAATTTTTATCCATCTT
CCCTCTCTTACCTCCACTATTCTTCAATCTTTTTACCTATCTTATAAACT
ACTCTTATCTAATTCTATCTTCCTCTCTTCATTCCCTTTTACTTCCATAT
CATTTCCCCAACATCTTCTCTTTACAGCTCTCTCATTACTACTCCTCTTC
CTTTACTCCTTCTCCCCCGCTCTTCTCTCTCCCCCCTTCTTTTTACCCTT
TTATTTTTTCCCCTTCCATCCCTTCCCCCCATATTCTTTACACATTGTTT
TATATTTTTCCCGTTTCCGCCTTTCCATATATTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no194_d09.b1 MSMg01no194_d09.b1 CHROMAT_FILE:
MSMg01no194_d09.b1 PHD_FILE: MSMg01no194_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:01 2005
         (670 letters)



>mm_chr4_134898331_134899400
          Length = 1070

 Score = 1249 bits (646), Expect = 0.0
 Identities = 661/666 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccattattctcttcatttttaggactttaaaaaataaatctgtggggatttgtaa 64
           |||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 gaattccattaggcttttcatttttaggactttaaaaaataaatctgtggggatttgtaa 811

                                                                       
Query: 65  tgaaaagaggaggtaatatttttgttgtttgtgctgagttggaaaacctagagaagcagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 tgaaaagaggaggtaatatttttgttgtttgtgctgagttggaaaacctagagaagcagt 751

                                                                       
Query: 125 gcctctaaaggctgagtgtgccccgccatgctgggcagctttactacaagttttaaaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 gcctctaaaggctgagtgtgccccgccatgctgggcagctttactacaagttttaaaaaa 691

                                                                       
Query: 185 taatcaatacttttgaattaggtgcacttcagcttaaaaagaaagaggggcccccaccaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 taatcaatacttttgaattaggtgcacttcagcttaaaaagaaagaggggcccccaccaa 631

                                                                       
Query: 245 taaaaagttggcatttctcttttcttgtgaagaacatactacttgcattgcactatctat 304
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 taaaaaattggcatttctcttttcttgtgaagaacatactacttgcattgcactatctat 571

                                                                       
Query: 305 ccattttctgcatcttcgggctctgcctggtcatctctgatacgagctacttgtacttag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ccattttctgcatcttcgggctctgcctggtcatctctgatacgagctacttgtacttag 511

                                                                       
Query: 365 tccctgtatattggtagggttgattgactgttgagaaagtggttgctttaagcactttga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tccctgtatattggtagggttgattgactgttgagaaagtggttgctttaagcactttga 451

                                                                       
Query: 425 tctcaggctctggtctttgaatgatcgccgggatagttgagaaccatgcctccagcctaa 484
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tctcaggccctggtctttgaatgatcgccgggatagttgagaaccatgcctccagcctaa 391

                                                                       
Query: 485 ctccgtgcctccccttctaactggtccttgaggctgtcacctctgtttgcttgtccttct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ctccgtgcctccccttctaactggtccttgaggctgtcacctctgtttgcttgtccttct 331

                                                                       
Query: 545 agttctctctggccttttccttctcaagtagatgaaatggatatcttgtttccatgtgaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 agttctctctggccttttccttctcaagtagatgaaatggatatcttgtttccatgtgaa 271

                                                                       
Query: 605 acttctcagatacagatcacagtgggtaacttacaagattaatccttgattttcccgttg 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 acttctcagatacagatcacagtgggtaacttacaagattaatccttgattttcccgttg 211

                 
Query: 665 tctact 670
           ||||||
Sbjct: 210 tctact 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no194_d09.g1 MSMg01no194_d09.g1 CHROMAT_FILE:
MSMg01no194_d09.g1 PHD_FILE: MSMg01no194_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:01 2005
         (235 letters)



>mm_chr4_134734572_134735206
          Length = 635

 Score =  433 bits (224), Expect = e-126
 Identities = 230/232 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaccacaactaatgcaagacctgtccccaggtacacccagggtgggtcacccagcagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaccacaactaatgcaagacctgtccccaggtacacccagggtgggtcacccagcagga 260

                                                                       
Query: 61  cctctccctgggttggaacaggaaactgtcttcacagcccacatgcttctacttggttta 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccctccctgggttggaacaggaaactgtcttcacagcccacatgcttctacttggttta 320

                                                                       
Query: 121 tctgagggtggacctgtaggtggccgctacaactgaagagcaaaacccctgactgtattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgagggtggacctgtaggtggccgctacaactgaagagcaaaacccctgactgtattt 380

                                                               
Query: 181 aactcctgtcacctgcatcccacttgtcaaaaggatacagaccaagagatgt 232
           |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 aactcctgtcacctgcatcccacttgtcaaaaggatacagactaagagatgt 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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