Query= MSMg01no194_g11.b1 MSMg01no194_g11.b1 CHROMAT_FILE:
MSMg01no194_g11.b1 PHD_FILE: MSMg01no194_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:16 2005
(478 letters)
>mm_chr4_125251076_125251953
Length = 878
Score = 806 bits (417), Expect = 0.0
Identities = 458/477 (96%), Gaps = 12/477 (2%)
Strand = Plus / Plus
Query: 8 gaattcacacttc--tgcccaaatgtgtttcaaacaattagcaggtctttaccgcaggag 65
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcacacttcagtgg--aaatgtgtttcaaacaattagcaggtctttaccgcaggag 265
Query: 66 tctttgaagttggagcccagacccatctctctgaagggtttccctagaactgacaggctg 125
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tctttgaagtcggagcccagacccatctctctgaagggtttccctagaactgacaggctg 325
Query: 126 gcagacgctgacacagctcggcctttgctggagtgccaagggctcccatctctgggctgg 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gcagacgctgacacagctcggcctttgctggagtgccaagggctcccatctctgggctgg 385
Query: 186 caccttaggtttcaaatgagtccctccagcagccccagtgtggtcctccattgctgtgtg 245
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 386 caccttaggtttcaaatgagtccctccagcggccccagtgtggtcctccattgctgtgtg 445
Query: 246 atacagagggatctgcatcgctgagacccgaggtcctgtaggggagccagccttctgggc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 atacagagggatctgcatcgctgagacccgaggtcctgtaggggagccagccttctgggc 505
Query: 306 agcctataccaagaccacaggatttcctgttttccaaacctaaccctgggctgggcagca 365
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 506 agcctataccaagaccacaggatttcctggtttccaaacctaaccctgggctgggcagca 565
Query: 366 gaagccc----ccccccgcgagctgagaactccagcatccttgaaccttgcctggctgtt 421
||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gaagcccttgtct----gtgagctgagaactccagcatccttgaaccttgcctggctgtt 621
Query: 422 tgtgctattaacagctgaataactttgatggactcttagaaagatgcaaacagatgg 478
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 622 tgtgctattaacagctgaataactctgatggactcttagaaagatgcaaacagatgg 678
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space: 406224
Effective search space used: 406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no194_g11.g1 MSMg01no194_g11.g1 CHROMAT_FILE:
MSMg01no194_g11.g1 PHD_FILE: MSMg01no194_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:16 2005
(343 letters)
>mm_chr4_125406172_125406914
Length = 743
Score = 576 bits (298), Expect = e-169
Identities = 336/364 (92%), Gaps = 24/364 (6%)
Strand = Plus / Minus
Query: 1 attacctacggggacctgccttcttttgttcctgttcccagatttcagccgctcttttcc 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 attacctaccgggacctgccttcttttgttcctgttcccagatttcagccgctcttttcc 409
Query: 61 aagccggatcccacccacacctttttgagagactctctcctcagtctggagactcaggct 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 408 aagccggatcccacccacacccttttgagagactctctcctcagtctggagactcaggct 349
Query: 121 agagaattttgtttgtgactcttgaggacacaaggcagggagctcttctaaggtgcttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 agagaattttgtttgtgactcttgaggacacaaggcagggagctcttctaaggtgcttct 289
Query: 181 agaattctggatcttctttttaaggtgcaactgagatctctgtggattttaaatgttttt 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 agaatcctggatcttctttttaaggtgcaactgagatctctgtggattttaaatgttttt 229
Query: 241 acctctctctcttccactgctttgtgtgtgtgtgtgtgtgt------------------- 281
|||||||||||||| ||||||||||||||||||||||||||
Sbjct: 228 acctctctctcttctactgctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 169
Query: 282 -----acaggtgcgtgtggaagccagaggtcaaccttgggtgtcgtcaaccatccgcttt 336
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 tgtatacaggtgcgtgtggaagccagaggtcaaccttgggtgtcgtcaaccatccgcttt 109
Query: 337 gttt 340
||||
Sbjct: 108 gttt 105
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space: 245156
Effective search space used: 245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
