Query= MSMg01no194_i21.b1 MSMg01no194_i21.b1 CHROMAT_FILE:
MSMg01no194_i21.b1 PHD_FILE: MSMg01no194_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:27 2005
(159 letters)
>mm_chr4_129485762_129486319
Length = 558
Score = 284 bits (147), Expect = 1e-81
Identities = 153/155 (98%), Gaps = 1/155 (0%)
Strand = Plus / Plus
Query: 5 gaattcaggagagttgatcagttatggtttctccattaccaaagtctgtgtttagcggtg 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggagagttgat-agttatggtttctccattaccaaagtctgtgtttagcggtg 263
Query: 65 gggaagatttggtaatttcattctcatcacatggaagtggttgaggagagtcagtttttg 124
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 264 gggaagatttggtaatttcattctcatcacatggaagtggttgaggagagccagtttttg 323
Query: 125 tctcttgtgatagttgcactggaaggaaagatagc 159
|||||||||||||||||||||||||||||||||||
Sbjct: 324 tctcttgtgatagttgcactggaaggaaagatagc 358
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 558
Length adjustment: 8
Effective length of query: 151
Effective length of database: 550
Effective search space: 83050
Effective search space used: 83050
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no194_i21.g1 MSMg01no194_i21.g1 CHROMAT_FILE:
MSMg01no194_i21.g1 PHD_FILE: MSMg01no194_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:27 2005
(497 letters)
>mm_chr4_129606361_129607257
Length = 897
Score = 930 bits (481), Expect = 0.0
Identities = 493/497 (99%)
Strand = Plus / Minus
Query: 1 aaaaaggtgatcaaggctgtctggcgcaaccccatccttagaaaagagcatgttttcaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 aaaaaggtgatcaaggctgtctggcgcaaccccatccttagaaaagagcatgttttcaac 638
Query: 61 ctcggtttctacagcacattccacccaacttccacctggctctccaggctcagtgtcctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ctcggtttctacagcacattccacccaacttccacctggctctccaggctcagtgtcctt 578
Query: 121 agaagaaagaagccttgggggacctgcaaaggcctctggagaagcacactcgggagggtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 agaagaaagaagccttgggggacctgcaaaggcctctggagaagcacactcgggagggtc 518
Query: 181 cccatctggtctttgaccaaacctcagggaaaaacctgacttttcctcctcctggggaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 cccatctggtctttgaccaaacctcagggaaaaacctgacttttcctcctcctggggaca 458
Query: 241 gattccacacttcctgcatttccttcggaaagggggcaggactggagatgggggcgggcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gattccacacttcctgcatttccttcggaaagggggcaggactggagatgggggcgggcc 398
Query: 301 ctttgcactgagcccctctttgctgagtgtaggatcctctggccaaaccattccttcgac 360
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 397 ctttgcactgagcccctctttgctgagtgtaggatcctctggggaaaccattccttcgac 338
Query: 361 agtggtggcttgtctaaagctggggctgctggcctcttccattcctgctggcccctctgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 agtggtggcttgtctaaagctggggctgctggcctcttccattcctgctggcccctctgt 278
Query: 421 acagaccagtactctatctggtaagtccagtgatgtaccacaaagacttctggagcttcc 480
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 277 acagaccagtactctatctgggaagtccagtgatgtaccacaaagacttctggagcttcc 218
Query: 481 agtatccaagaagtcac 497
|||| ||||||||||||
Sbjct: 217 agtagccaagaagtcac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space: 431969
Effective search space used: 431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
