CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGCGGA
ATTCATGATTTCCGATTTGGGGAGATGCTGTTCTGGCTTTATGTGTTTGG
TGTTCTGAAAGCTTCCAGTATCTGAATGGCTGTTTCTTCCTGTGACTTAA
AAAAGTTTTTATTGTTTTGCTGAATGTATTTTTGTATGCTTTCACCTTAA
GCTTCTACTTTCTCTAAACTTATAATTTATAAATTTGGACTTTTTCATGG
TGCCATAAGTCTCCTATATTCTGATCATACTTTTTTATTGATTACATTTA
TAACTGCCTGGCTGATCTTCATTATCTTTCTGTCTCTGTAGTCTATCTCC
CATTTGACCCATTCTCTTAGTAAACCTTTTACTGTTCTGATTTGACTTAT
TGAGAGTGTCATTTACAAAATTTCAACTTGATTTTAAAATATTTTTTATT
AAATCTCCCTTTTGTAGTTTATTTTAAACACTTTATTAATATGTTCATAT
TCCCATGGGATTGATTCAAGAGTTCATTTGTCTCCTTTGCTGTTGTTGTT
GCTGACCATTTTTATGAGCAGTCTATTTAATTCTTCATCTCTATGTGTTT
TATCTACATACTTCCAGTGTGAATATAATTCATAATATAGAAATTGTAGG
TTAAGATGGTGGGAACTTCAAACTGTAGTTTCTGCCAGTTATAAT

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTAAGGAATACCGAATGGCA
GAGAAACACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACACTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGA
TCAAAAACTCAGGTGACAGCAGATGTTGGCGAGGATGTGGAGAAAGGGGA
ACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTAATACCGGAGGATC
CCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAG
AAGAACACATGCTCCACTATGTTCATAGCAGCCTTGTTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATTTACACAATGGAATACTACTCAGCTATTAAAAAAATGAAT
TTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGTATCATCCTGAGT
GAAGTAACCCAATCACAAAGGAACTCGCACAATATGTACTCATTGATAAG
TGGATAATAGCCCAGAAACTTAGGATACCCAAGATATAAGATACAACTTG
CCAA

Query= MSMg01no194_m10.b1 MSMg01no194_m10.b1 CHROMAT_FILE:
MSMg01no194_m10.b1 PHD_FILE: MSMg01no194_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:45 2005
         (648 letters)



>mm_chr4_65123911_65124958
          Length = 1048

 Score =  830 bits (429), Expect = 0.0
 Identities = 435/437 (99%), Gaps = 2/437 (0%)
 Strand = Plus / Minus

                                                                        
Query: 213  ataagtctcctatattctgatcatacttttttattgattacatttataactgcctggctg 272
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1048 ataagtctcctatattctgatcatacttttttattgattacatttataactgcctggctg 989

                                                                        
Query: 273  atcttcattatctttctgtctctgtagtctatctcccatttgacccattctcttagtaaa 332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988  atcttcattatctttctgtctctgtagtctatctcccatttgacccattctcttagtaaa 929

                                                                        
Query: 333  ccttttactgttctgatttgacttattgagagtgtcatttacaaaatttcaacttgattt 392
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928  ccttttactgttctgatttgacttattgagagtgtcatttacaaaatttcaacttgattt 869

                                                                        
Query: 393  taaaatattttttattaaatctcccttttgtagtttattttaaacactttattaatatgt 452
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868  taaaatattttttattaaatctcccttttgtagtttattttaaacactttattaatatgt 809

                                                                        
Query: 453  tcatattcccatgggattgattcaagagttcatttgtctcctttgctgttgttgttgctg 512
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808  tcatattcccatgggattgattcaagagttcatttgtctcctttgctgttgttgttgctg 749

                                                                        
Query: 513  accatttttatgagcagtctatttaattcttcatctctatgtgttttatctacatacttc 572
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748  accatttttatgagcagtctatttaattcttcatctctatgtgttttatctacatacttc 689

                                                                        
Query: 573  cagtgtgaatataattcataatatagaaattgtagg-ttaagatggtgggaacttcaaac 631
            |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 688  cagtgtgaatataattcataatatagaaattg-agggttaagatggtgggaacttcaaac 630

                             
Query: 632  tgtagtttctgccagtt 648
            |||||||||||||||||
Sbjct: 629  tgtagtttctgccagtt 613


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)