CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGGGGTCTGCTCTAATTTATAATCTCAACTGTGAACACAGGCTCT
TCTTTCTCCACATCTGTCCCACCACATGATCATGGGTTCTTCTTCCTCCA
CTTCTGTTCCAGAATATGAACATGGGCTTTTCTTTCTCCACATCTGCTCC
AGCACATGATTCGTCACCACTCTGGCTAGGGTGACATGTTGTCTCAAAGC
AACTTTAGTTTGCATTTTTCTGATGGCTAGACATGTTAAACACTTTTTAA
AAATATTTATTGGCCTATTGTGTTTCTTCTTTTCAGAATTATCTGTTCAT
AGCATTAGCCAATTAATTGATCGGCAGTTCTGAGGATTGAGAAAATTATA
GCTCTTCAAATATTGTAGAATATCTGTAGTTATCTGAAGTATAAGTGACA
AAGATTTTTCTCCCTGTCTGTCTGTCTGTCTGTCTGTACATATCTATGTA
TGTTTTTGTGTGAGAGAGAAAGCATGAGACAGAGACAGATAAAGACAGAC
AGAGTCAGAGTGCAACTCTGGGGAATTGGTTTTCTCCTACCACTGTGTGG
GACCCAAGCATCAGATTCAACTAGTGTCTGTGCTCAAGTGCTTCCACCCA
CTGAGCCATCTTAGCCGCTCAGCTGTCTGTTCATCTTCTGTATAGNCTTC
CTTGCAGTGTGAAGCTT

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAAAATTGTATAGTTCACCAATA
AATGTTTTCATTGGAGTGTAAGTTTGTATGTACAAGTGTGTGGGGTGTGT
TTGTGTGACTGTGTGACATGTGTGCGATGTGTGGAATGTGTGTATAGTAT
GTGTATGCGTCCTATTTCCTCCCCCACATCTTTTCCTTTACTTCTTACTC
CTTTTCTCACTTTTCTTTTCTTTTCTATATTCCCCCCACCTCCCTTCCCT
CTTCTACCNNGGNCCCTTTTTTTTTTTCTCCCCTTTATCCCAATATAAAA
TATTTTTTTTGTGGTCCCTAAAAACAAAACCCCCGAAGTAGTTTATATTT
AAGGTGTCGTTGTGGGCGCCCCCCAAAAAAAAAAAAAAATATTCGTGTGG
TGGGGGTTTGTGATTTTCTCATCTCTTTCTTATTTCCCCTACCTTCATTA
TTATTTTTCATTTTCTACTCCTCTTATTTTAACTATTCCTTCCTTTTTCT
CTACATCTTTCTAATTGTCTCTTTCTTCTCCCTTCACTGTCCCCCTTACT
ATATTCTCCCTCTTATTACTCCCCCTTTTTCCCTTTTCGTCTATTCTCTT
TACCACTTTATTTATCCTCCTAATATTCATTAATACTACTACTAACCCTC
CCTTTTTTGCTCCTTTTTTTCACCTTTTTTTCTCTTTTTTTTTATATCCT
TACTTTTACTTTTATCCCCCATTATATCCATTTT

Query= MSMg01no194_p12.b1 MSMg01no194_p12.b1 CHROMAT_FILE:
MSMg01no194_p12.b1 PHD_FILE: MSMg01no194_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:01 2005
         (618 letters)



>mm_chr4_100255824_100256841
          Length = 1018

 Score = 1106 bits (572), Expect = 0.0
 Identities = 600/614 (97%), Gaps = 8/614 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctggggtctgctctaatttataatctcaactgtgaacacaggctcttctttctcc 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgggggctgctctaatttataatctcaactgtgaacacaggctcttctttctcc 264

                                                                       
Query: 65  acatctgtcccaccacatgatcatgggttcttcttcctccacttctgttccagaatatga 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acatctgtcccagcacatgatcatgggttcttcttcctccacttctgttccagaatatga 324

                                                                       
Query: 125 acatgggcttttctttctccacatctgctccagcacatgattcgtcaccactctggctag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acatgggcttttctttctccacatctgctccagcacatgattcgtcaccactctggctag 384

                                                                       
Query: 185 ggtgacatgttgtctcaaagcaactttagtttgcatttttctgatggctagacatgttaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggtgacatgttgtctcaaagcaactttagtttgcatttttctgatggctagacatgttaa 444

                                                                       
Query: 245 acactttttaaaaatatttattggcctattgtgtttcttcttttcagaattatctgttca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 445 acactttttaaaaatatttattggcctattgtgtttcttcttttcagaactatctgttca 504

                                                                       
Query: 305 tagcattagccaattaattgatcggcagttctgaggattgagaaaattatagctcttcaa 364
           ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 505 tagcattggccaattaattgattggcagttctgaggattgagaaaattatagctcttcaa 564

                                                                       
Query: 365 atattgtagaatatctgtagttatctgaagtataagtgacaaagatttttctccctgtct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atattgtagaatatctgtagttatctgaagtataagtgacaaagatttttctccctgtct 624

                                                                       
Query: 425 gtctgtctgtctgtctgtacatatctatgtatgtttttgtgtgagagagaaagcatgaga 484
           ||||||||||        ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtctgtctgt--------acatatctatgtatgtttttgtgtgagagagaaagcatgaga 676

                                                                       
Query: 485 cagagacagataaagacagacagagtcagagtgcaactctggggaattggttttctccta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 cagagacagataaagacagacagagtcagagtgcaactctggggaattggttttctccta 736

                                                                       
Query: 545 ccactgtgtgggacccaagcatcagattcaactagtgtctgtgctcaagtgcttccaccc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 737 ccactgtgtgggacccaagcatcagattcaactagtgtctgtgctcaagtgtttccaccc 796

                         
Query: 605 actgagccatctta 618
           ||||||||||||||
Sbjct: 797 actgagccatctta 810


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)