BAC Information

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BAC

Clone NameMSMg01-196C20
Chromosome4 (Build37)
Map Location 76,840,729 - 76,876,191
singlet/doubletdoublet
Overlap genenone
Upstream genePtprd, LOC667858, LOC667862
Downstream geneLOC100039974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-196C20.T7 (MSMg01no196_c20.b1)MSMg01-196C20.TJ (MSMg01no196_c20.g1)
ACCAG384392AG384393
length746757
length of high quality
(start - end)		640 (37 - 676)630 (77 - 706)
definitionCHROMAT_FILE: MSMg01no196_c20.b1 PHD_FILE: MSMg01no196_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:38 2005CHROMAT_FILE: MSMg01no196_c20.g1 PHD_FILE: MSMg01no196_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:15:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,875,595 - 76,876,191)(76,840,729 - 76,841,358)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAAG
TGTGTAACCTGGCAATGCTTCTACTGAGCAGATGCTTTGGCCTTAAGAAA
TGCTACTCATATCTTGTTATCTTCATGAGGAAAATGCAAAGCTCTAATGC
TTGTTCTTAATTTTCTTTTAGCAAGACTAAGACATGAAACAAAAGTCAAA
ACCTAATACTAAAATTCTTGACAATAAAAATCATGTATAAGTATGATAAA
ATGTGATCGTGCTATTGAAAATTGTTCTTAATTGATAAAATATTTATGAG
TCTGGTAACTATAATCTTCAATTATGTTTAAGTATTCAGCCATTCTTTCT
AATCCTTAACTTCAGATGACACTCATAGTAATTACTTCCTGCTCTATTCT
AAAGAAACATGCTAGTCACTCTAATTTGTTCTGAAAATATTTTAATGAAT
ACATAATTAATTATAATTAATGTACAAATATTAATCTCTGGCCCTGGTAT
TGCTTGCCCTAGCACAATTTAATGTAGTTATTCTGAGTGATTATCCATCC
ATTGACAGTATTGCCTTGATAGTGCATTTATAGTTTAAATTCTTTTTGCA
ATATAAGTCAATCTGTATTTACCCACATCAGTGTGATATATCTGATTTTG
TTATTTAACTAAATCATTTTTATTTGCATATGATGCTTTTTGAAAAATAT
TTAATGGCTTCATAATATTGCAGTTGTTCAAGAGCTAAATGGGTAA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACATGACAATGAACATTCCATAT
CATAATTATAAGGCTGTGCCCAACTCCATTGTGCAGAAGATATTTTTTCC
ACTCATCAAAACTTATATTTATAGCTAATTTTATTGGTTTTAAGCTAGTT
GGCTATGATCATGCCTGGAATTAGTTGATAGATGTCATAGCCTTTGCAAT
TGCCTTATTATTTTCATATTGCTTATTAACCAATAAATATTATTGATCTC
TAAAATTTGCTGTTTCTAAATATATGCTTTTAATTTGAATAAAATTTTAA
AAATTAATCCCTTCTCAATAAAAAAATGAGAAGTCCATAAATGAATGTAG
TATAGCAGGTATTCTGCATAGCTTGCAGTTGACTGCAATAAAAGTTGAAA
AGGAAAACAATAAAAGAAGCAGAGACATGTTGATTGCTTAACGATTAGTG
TTCTTCTGGAGGCTGTATTTTCTACTATGTACTATGGTGTTTAAACTTAA
TTCTCTAATGAAAGCATTAACTGCGACAAATGAGTGTTGAATACTTAACA
ATTGTTATCATATGTTAAACTGAGATTTTACTGAAAAGAGTAATGGTGGA
ATTTAATTCAGTACCACTTTCATGTATATGAAAATTAACATATCAAAATT
TGATGTCTTTTGCCACTGTGCCTGTGGGTCTGTGGGTCTAGCCGTGGGTC
CCTGTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no196_c20.b1 MSMg01no196_c20.b1 CHROMAT_FILE:
MSMg01no196_c20.b1 PHD_FILE: MSMg01no196_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:38 2005
         (640 letters)



>mm_chr4_76875595_76876634
          Length = 1040

 Score = 1131 bits (585), Expect = 0.0
 Identities = 594/597 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctaagtgtgtaacctggcaatgcttctactgagcagatgctttggccttaagaa 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ggaattctaagtgtgtaaactggcaatgcttctactgagcagatgctttggccttaagaa 538

                                                                       
Query: 64  atgctactcatatcttgttatcttcatgaggaaaatgcaaagctctaatgcttgttctta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 atgctactcatatcttgttatcttcatgaggaaaatgcaaagctctaatgcttgttctta 478

                                                                       
Query: 124 attttcttttagcaagactaagacatgaaacaaaagtcaaaacctaatactaaaattctt 183
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 477 attttcttttagcaagactaagacacgaaacaaaagtcaaaacctaatactaaaattctt 418

                                                                       
Query: 184 gacaataaaaatcatgtataagtatgataaaatgtgatcgtgctattgaaaattgttctt 243
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gacaataacaatcatgtataagtatgataaaatgtgatcgtgctattgaaaattgttctt 358

                                                                       
Query: 244 aattgataaaatatttatgagtctggtaactataatcttcaattatgtttaagtattcag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 aattgataaaatatttatgagtctggtaactataatcttcaattatgtttaagtattcag 298

                                                                       
Query: 304 ccattctttctaatccttaacttcagatgacactcatagtaattacttcctgctctattc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ccattctttctaatccttaacttcagatgacactcatagtaattacttcctgctctattc 238

                                                                       
Query: 364 taaagaaacatgctagtcactctaatttgttctgaaaatattttaatgaatacataatta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 taaagaaacatgctagtcactctaatttgttctgaaaatattttaatgaatacataatta 178

                                                                       
Query: 424 attataattaatgtacaaatattaatctctggccctggtattgcttgccctagcacaatt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 attataattaatgtacaaatattaatctctggccctggtattgcttgccctagcacaatt 118

                                                                       
Query: 484 taatgtagttattctgagtgattatccatccattgacagtattgccttgatagtgcattt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 taatgtagttattctgagtgattatccatccattgacagtattgccttgatagtgcattt 58

                                                                    
Query: 544 atagtttaaattctttttgcaatataagtcaatctgtatttacccacatcagtgtga 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  atagtttaaattctttttgcaatataagtcaatctgtatttacccacatcagtgtga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no196_c20.g1 MSMg01no196_c20.g1 CHROMAT_FILE:
MSMg01no196_c20.g1 PHD_FILE: MSMg01no196_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:38 2005
         (630 letters)



>mm_chr4_76840529_76841558
          Length = 1030

 Score = 1187 bits (614), Expect = 0.0
 Identities = 626/630 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacatgacaatgaacattccatatcataattataaggctgtgcccaactccattgtgcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacatgacaatgaacattccatatcataattataaggctgtgcccaactccattgtgcag 260

                                                                       
Query: 61  aagatattttttccactcatcaaaacttatatttatagctaattttattggttttaagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 aagatattttttccactcatcaaaacttatatttatagctaattttattggctttaagct 320

                                                                       
Query: 121 agttggctatgatcatgcctggaattagttgatagatgtcatagcctttgcaattgcctt 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 agttggctatgatcacgcctggaattagttgatagatgtcatagcctttgcaattgcttt 380

                                                                       
Query: 181 attattttcatattgcttattaaccaataaatattattgatctctaaaatttgctgtttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attattttcatattgcttattaaccaataaatattattgatctctaaaatttgctgtttc 440

                                                                       
Query: 241 taaatatatgcttttaatttgaataaaattttaaaaattaatcccttctcaataaaaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaatatatgcttttaatttgaataaaattttaaaaattaatcccttctcaataaaaaaa 500

                                                                       
Query: 301 tgagaagtccataaatgaatgtagtatagcaggtattctgcatagcttgcagttgactgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgagaagtccataaatgaatgtagtatagcaggtattctgcatagcttgcagttgactgc 560

                                                                       
Query: 361 aataaaagttgaaaaggaaaacaataaaagaagcagagacatgttgattgcttaacgatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aataaaagttgaaaaggaaaacaataaaagaagcagagacatgttgattgcttaacgatt 620

                                                                       
Query: 421 agtgttcttctggaggctgtattttctactatgtactatggtgtttaaacttaattctct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtgttcttctggaggctgtattttctactatgtactatggtgtttaaacttaattctct 680

                                                                       
Query: 481 aatgaaagcattaactgcgacaaatgagtgttgaatacttaacaattgttatcatatgtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatgaaagcattaactgcgacaaatgagtgttgaatacttaacaattgttatcatatgtt 740

                                                                       
Query: 541 aaactgagattttactgaaaagagtaatggtggaatttaattcagtaccactttcatgta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaactgagattttactgaaaagagtaatggtggaatttaattcagtaccactttcatgta 800

                                         
Query: 601 tatgaaaattaacatatcaaaatttgatgt 630
           ||||||||| ||||||||||||||||||||
Sbjct: 801 tatgaaaatcaacatatcaaaatttgatgt 830


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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