Query= MSMg01no197_a03.b1 MSMg01no197_a03.b1 CHROMAT_FILE:
MSMg01no197_a03.b1 PHD_FILE: MSMg01no197_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:44 2005
(637 letters)
>mm_chr4_54801883_54802919
Length = 1037
Score = 1185 bits (613), Expect = 0.0
Identities = 628/633 (99%)
Strand = Plus / Plus
Query: 5 gaattctctgtccatgctattttccttttcacaagtggaaactgaggcccagagaaagtt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgtccatgctattttccttttcacaagtggaaactgaggcccagagaaagtt 264
Query: 65 actgtttgaactgccccttcacagcaactatgtggccaggctggaactttaattctgatc 124
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actgtttgaactgaagcttcacagcaactatgtggccaggctggaactttaattctgatc 324
Query: 125 ttctgagtttgagtcccttcgaaatgtttttcctcacggcttcacgtactcatcaagggt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttctgagtttgagtcccttcgaaatgtttttcctcacggcttcacgtactcatcaagggt 384
Query: 185 cacctgtaccaattgacatatgaatagagcttaaaatcacatctatctcttaaatacccc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cacctgtaccaattgacatatgaatagagcttaaaatcacatctatctcttaaatacccc 444
Query: 245 aaataacacactcacctccaggccagttccatgagagggtcagaaacagaagcacatcct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaataacacactcacctccaggccagttccatgagagggtcagaaacagaagcacatcct 504
Query: 305 tcaaaacacccagaattgtatttccatctacaaaggtgtcccctcatttttgagttgtgt 364
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcaaaacacccagaagtgtatttccatctacaaaggtgtcccctcatttttgagttgtgt 564
Query: 365 gcatttgatgatccgcttatttgggttctttagaaaagaggaacttacttataccccata 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcatttgatgatccgcttatttgggttctttagaaaagaggaacttacttataccccata 624
Query: 425 ggtcctcctattaattacactctcaaaaggctgatttaaagacagcaagccctgtgaaga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggtcctcctattaattacactctcaaaaggctgatttaaagacagcaagccctgtgaaga 684
Query: 485 tgtttgaaaacagtgggccaccataggacatggaaacgggctaatcaggaaactctgatg 544
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgtttgaaaacagtggcccaccataggacatggaaacgggctaatcaggaaactctgatg 744
Query: 545 cttgtgtccagcctgtccttgaaggtgaatgcagggatctccttccaacatgtctaagga 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cttgtgtccagcctgtccttgaaggtgaatgcagggatctccttccaacatgtctaagga 804
Query: 605 gcagtcctgctcccagcagaactgtggcaggaa 637
|||||||||||||||||||||||||||||||||
Sbjct: 805 gcagtcctgctcccagcagaactgtggcaggaa 837
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no197_a03.g1 MSMg01no197_a03.g1 CHROMAT_FILE:
MSMg01no197_a03.g1 PHD_FILE: MSMg01no197_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:44 2005
(650 letters)
>mm_chr4_54936451_54937500
Length = 1050
Score = 696 bits (360), Expect = 0.0
Identities = 373/380 (98%), Gaps = 5/380 (1%)
Strand = Plus / Minus
Query: 1 cagtgcttcaagagataaagtcaatctgtacggttgaaaagaatataagccgtccttgac 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 380 cagtgcttcaagagataaagtcaatctgtacggttgaaaagaatataagttgtccttgac 321
Query: 61 agcacccaaagtcaggaaaatacacatagaaaagaaactataagtgcttatggcaatgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agcacccaaagtcaggaaaatacacatagaaaagaaactataagtgcttatggcaatgta 261
Query: 121 gaatggaagagaccagttgattatgttgcattctccaataaaacaggtcattatgtcacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gaatggaagagaccagttgattatgttgcattctccaataaaacaggtcattatgtcacc 201
Query: 181 -----aaaaaaaaaaaaaaaagaaaaaaagaaagaaagcaactgtatcactggtgtcagg 235
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 aaaaaaaaaaaaaaaaaaaaagaaaaaaagaaagaaagcaactgtatcactggtgtcagg 141
Query: 236 cagatgagatggctccatggttcagagcacttgcttctcttctggagtacatgaatgcac 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 cagatgagatggctccatggttcagagcacttgcttctcttctggagtacatgaatgcac 81
Query: 296 ttcccagcattcctaaagggaatgctctcctaaagggaggtgctcaatggtcttaactcc 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 ttcccagcattcctaaagggaatgctctcctaaagggaggtgctcaatggtcttaactcc 21
Query: 356 tactccaggggattggatgc 375
||||||||||||||||||||
Sbjct: 20 tactccaggggattggatgc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
