CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAGAAGGTGCACTCCAAAAAATCAAATAACCCCATTAAAAAAAT
GGGGATCAGAGCTGAACAAAGAATTCTCTCCTGAGGAATACCAAATGGCT
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGATATGCA
AATCAAAACGACACTGAGATTCTACTTCACTCCAGTCAGAATGGCTAAGA
TCAAAAACTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGGGGA
ACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTTTTGAA
ATCAGTCTGTCAGTTCCTCAGAAAATTGGACATAGTACTACCAGAGGATC
CCGCAATACTGCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAG
AAGGACACATGCTCTACTATGTTCATAGCAGCCTTATTTATAATAGTCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAAATGAAT
TTATGAAATTCTTATGCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAATCCAATCACAAAGGAACTCACACAATATATACTCACTGACAAG
TGGATATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATACAA

GAAGCAANNTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGATCT
GTACCCTATTTTTATTTGTGATATTTGTTTTCATAATAACCACTTTTTAG
TTCAATTTTTCTCATATTTTAGAATTTCACTTTAAGCTTTCTCTAAACAT
ACCCAGTTTCAGCTGTGTATACATCTGGCAGTGAGTACATGCAGCTAGAT
AGAGAATTAATAATTTCAATTGGCTTCATAATGATTTTTCTCATGTGAAA
TATTGACATGTCTTTGAACTTATGTAGATCAGAAAAAATATCAAGAAAAT
ACAAACTGTATCATTTTTAATTCTGCAGAAGACAAAGAGGCAGGGGTTTA
GTATTAGGCTTAAAATTCAAAACTCACCTAGGGTAGAAAAAAAGGTGGGA
ATTACTTGAAAATATGTATGTTCACACACTGAGACACACACATACACATA
CACACACACACACACACACACACACACACACACACACACACACACAGTCT
ACAAATATAAAAGAAATATGAAAAGAATCTTAAAGAGTTGTGAGACAACT
GAGCTAAGAGCTATGCACTTCATGAAAATGTGGAAAGTAGATGAAACGAA
GGCATTAAAAGTAGGAAAAATGAATGAATACTGAATAAAATTTACCAAAT
AAGACTGCAGACATAAACTGTAGTTTACAGAAGTCCAGTATAAGC

Query= MSMg01no199_h11.g1 MSMg01no199_h11.g1 CHROMAT_FILE:
MSMg01no199_h11.g1 PHD_FILE: MSMg01no199_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:02 2005
         (658 letters)



>mm_chr4_38964088_38965145
          Length = 1058

 Score = 1183 bits (612), Expect = 0.0
 Identities = 638/658 (96%), Gaps = 18/658 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtttagatctgtaccctatttttatttgtgatatttgttttcataataaccactttt 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 682 tctgtttagatctgtaccctatttttatttgtgatatttgtttttataataaccactttt 623

                                                                       
Query: 61  tagttcaatttttctcatattttagaatttcactttaagctttctctaaacatacccagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tagttcaatttttctcatattttagaatttcactttaagctttctctaaacatacccagt 563

                                                                       
Query: 121 ttcagctgtgtatacatctggcagtgagtacatgcagctagatagagaattaataatttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ttcagctgtgtatacatctggcagtgagtacatgcagctagatagagaattaataatttc 503

                                                                       
Query: 181 aattggcttcataatgatttttctcatgtgaaatattgacatgtctttgaacttatgtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aattggcttcataatgatttttctcatgtgaaatattgacatgtctttgaacttatgtag 443

                                                                       
Query: 241 atcagaaaaaatatcaagaaaatacaaactgtatcatttttaattctgcagaagacaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 atcagaaaaaatatcaagaaaatacaaactgtatcatttttaattctgcagaagacaaag 383

                                                                       
Query: 301 aggcaggggtttagtattaggcttaaaattcaaaactcacctagggtagaaaaaaaggtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aggcaggggtttagtattaggcttaaaattcaaaactcacctagggtagaaaaaaaggtg 323

                                                                       
Query: 361 ggaattacttgaaaatatgtatgttcacacactgagacacacacatacacatacacacac 420
           ||||||||||||||||||||||||||| ||||||||||||||||||              
Sbjct: 322 ggaattacttgaaaatatgtatgttcatacactgagacacacacat-------------- 277

                                                                       
Query: 421 acacacacacacacacacacacacacacacacacacacagtctacaaatataaaagaaat 480
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ----acacacacacacacacacacacacacacacacacagtctacaaatataaaagaaat 221

                                                                       
Query: 481 atgaaaagaatcttaaagagttgtgagacaactgagctaagagctatgcacttcatgaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 atgaaaagaatcttaaagagttgtgagacaactgagctaagagctatgcacttcatgaaa 161

                                                                       
Query: 541 atgtggaaagtagatgaaacgaaggcattaaaagtaggaaaaatgaatgaatactgaata 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 atgtggaaagtagatgaaacgaaggcattaaaagtaggaaaaatgaatgaatactgaata 101

                                                                     
Query: 601 aaatttaccaaataagactgcagacataaactgtagtttacagaagtccagtataagc 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 aaatttaccaaataagactgcagacataaactgtagtttacagaagtccagtataagc 43


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)