BAC Information

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BAC

Clone NameMSMg01-202C08
Chromosome4 (Build37)
Map Location 96,708,224 - 96,708,526
singlet/doubletsinglet
Overlap genenone
Upstream geneCyp2j13, LOC242546, LOC546837, Cyp2j11, LOC665095, Cyp2j6, Cyp2j9, Cyp2j5, LOC100039415, LOC620779
Downstream geneLOC620883, EG638698, Nfia
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202C08.T7 (MSMg01no202_c08.b1)MSMg01-202C08.TJ (MSMg01no202_c08.g1)
ACCAG387416AG387417
length699690
length of high quality
(start - end)
307 (21 - 327)278 (60 - 337)
definitionCHROMAT_FILE: MSMg01no202_c08.b1 PHD_FILE: MSMg01no202_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:22:51 2005CHROMAT_FILE: MSMg01no202_c08.g1 PHD_FILE: MSMg01no202_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:22:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTAAGTAAAAGTCACTAAG
CAGAGAAGTAAAGATAAGATAGTTATTCAAAGATTTTATCAATTATACCA
GGATCATGTTTGAGTGATTTGAGGCTAGAAAGAGGTGGGTGAAAACAGAT
AAAGATACACGTTCATACACATCTCTGTATATATACAGATGAGCATATGA
AGCTTGAGTTATAAGAAACAAGTTTTTGGGCAGTGGTGATTGGTGTTTCT
CTTCTTACAGTACTGTAGAAAATCTTTTGATCAAGATAAAGTAATCCAGA
TTCTTACATTACTTTCCCCATTGTAGTGACCTTTTTATTTGATCCCCCCC
CCCCTGACTTCAGAAGAGCTTATTTAGGCAAGGAACTCACACCACGAGGA
TACAATTCGTTATGGTGGGGCAATTTAAGAAATAACACTGAATGTTCTAG
ATACCATCTTGAAGTGCACTATAGGGAACATGAACCAATATGGAGCAGCA
AATCTGATCTTAATTTTCCTCATTAGTTGGCAAATTATGTGACCCATTTC
TCTTAATCCCCATATGCCGCAGATCGCTCAGTATTTTGTTTCACAAACCT
TAAATGGTTTATTTGTAAACCCTTGTTTACTGCGTCTGACTTACTTTATT
AGCCGCCTATGACCTTATTTCCCTGATGATGATACCACCTTTGATATTA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCACCTTACACCAATCAAAATGGTTAAGACCAAAACCTCAGG
TGACAACACATGTTGGAGAATGTGTGGAGAAAGAGGAATAACTCCTCCAT
TGCTGGAGGGACTGCAAACTGGTACAACCACTTTGGAAATGAAACTGGAG
TTTCCTCAGAAAATTGGGAATAGATCTACCTGAAGACCCAGCTATACCAC
TCTTGGGCATATAGCCAAAAGATGCCCCACCATGGTAAACCACAAGATTA
CATGATCCACTATGTGCATAGCAGCTTTATTTTTGGCAACCAGATTCTGG
AAACAACCTACATGTTCCACAATGGAAGAACAGATACAGAAAATGTGGCC
CATTTACACAATGAAATACTATTCAGCTCTTAATAATGAGGACATCCTGA
GTTTTGCAGGCAAATGGATGGGACTAGAAAATATCATCTTGAGTGAGGTA
TCTAAAACCCAAAAGGACATTCATGGTATGTACTCACTAAGAGTGTATAT
TATCCAAAAGTGTACAGAATACCTAGGATACAATCCACAGAACTCACGAA
GGCGAAAAGCCATTTCCCTTTGGCAGACCCAATATATTACAGGTCGGTAG
GTTACTGATTGCCAGAGCCGAAAGGTTTTTTCTTTTTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_c08.b1 MSMg01no202_c08.b1 CHROMAT_FILE:
MSMg01no202_c08.b1 PHD_FILE: MSMg01no202_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:51 2005
         (307 letters)



>mm_chr4_96708020_96708726
          Length = 707

 Score =  578 bits (299), Expect = e-169
 Identities = 302/303 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtaagtaaaagtcactaagcagagaagtaaagataagatagttattcaaagat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtaagtaaaagtcactaagcagagaagtaaagataagatagttattcaaagat 264

                                                                       
Query: 65  tttatcaattataccaggatcatgtttgagtgatttgaggctagaaagaggtgggtgaaa 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttatcaattatatcaggatcatgtttgagtgatttgaggctagaaagaggtgggtgaaa 324

                                                                       
Query: 125 acagataaagatacacgttcatacacatctctgtatatatacagatgagcatatgaagct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acagataaagatacacgttcatacacatctctgtatatatacagatgagcatatgaagct 384

                                                                       
Query: 185 tgagttataagaaacaagtttttgggcagtggtgattggtgtttctcttcttacagtact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgagttataagaaacaagtttttgggcagtggtgattggtgtttctcttcttacagtact 444

                                                                       
Query: 245 gtagaaaatcttttgatcaagataaagtaatccagattcttacattactttccccattgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtagaaaatcttttgatcaagataaagtaatccagattcttacattactttccccattgt 504

              
Query: 305 agt 307
           |||
Sbjct: 505 agt 507


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space:   208004
Effective search space used:   208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)