BAC Information

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BAC

Clone NameMSMg01-202E18
Chromosome4 (Build37)
Map Location 52,239,844 - 52,240,077
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040814, LOC384015
Downstream geneLOC100041026, LOC100041038, LOC666724, Smc2, LOC100040883, 4930547C10Rik, LOC100040908, LOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202E18.T7 (MSMg01no202_e18.b1)MSMg01-202E18.TJ (MSMg01no202_e18.g1)
ACCAG387507AG387508
length716730
length of high quality
(start - end)
---234 (126 - 359)
definitionCHROMAT_FILE: MSMg01no202_e18.b1 PHD_FILE: MSMg01no202_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:03 2005CHROMAT_FILE: MSMg01no202_e18.g1 PHD_FILE: MSMg01no202_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGT
GATTCTCAACATCATGGCTCCCCTCGACTGAGGGTCTCTTGACTGTAGAG
AAGAACTGGAGGAGAGATGTCCCCCGAAAGGATTTTCCTTAATCCTGTGT
GGAGCTCATAACTCTGCCGCTAGGACCGGAGACAAAGGGGGGCGAGGTCA
GAGGACGTCGCTTCAGTCCGTATCTCTCCTACAAGCGAAATGCGAAAACA
CATAGCTACTCACATCCACAACACTTGCTATCCTTGACAGTCGATCGGCT
CAGTGGCTTGAAGACTTTAGTTCCTTTGTTGTGATCGACTTTCCCTGTGA
GAGCGGGATGGATGTTATTCTTTCGAACCGCACATGGCTCTCGCACACGC
GTGACCGGACACTTGGCCAACCGATGATGCCAATGTTACCGTGCTGTGGA
CAGGCTTGATTGACCACGATTCTAACGTGGACAGAGGCTGCAGAGAAAGT
CTGTTAACGACGATTGCTGTGTCCTTTCGGGTTCTGAATTGGACTACTGA
GTAGTGCCCGACAGTCACTCTGGTCACCATGTATTTCTCCAACATTCTAT
TGCAGAGATGAACGTCTTACGCGATGAACCAACATACATTCCTCCTCCAT
TTTGGCGGGGGCGCTCAGGAATATTCACACCAACGAAAGTGTGTGACCGT
GGTCCTCTAACACTAA
CGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAACTTTGGTGTGAACTTGGTCCT
TAGTTCATAATTTTGCACCAATCCTGGTTGGAAAAAGTTTTCTTTCTATA
AACTCAATTCTGGTTCTAATATTTCATTTTCCTCTACTCATATGTAATAT
TTTAAGGGGTGTGATAAGACATACTTATATTGTGGTGTTTTCTGGTCCTG
AATCTTCACATTACATATTGACTGAATCAGCATGATGGAAATTAGAAATA
TTTTATAGTACTTTACTGTACTTTTCTGTATCACTAAAAGCTTAATTATA
AGCAGTTGTGTTTATGTCTGCCCCCCGCCGCCACAAACACACATTCATGT
CCATATTACATACATATATGCATACCTCAATAAATATATATTTATACTTT
TAATTAAACTTCTTTGTATCTAGGATCCAAAATTGTTCTGGTTATTTTGG
TGGCAGAAATTTTGTAGCAGAAATGACATTTGAAACAAATTGTTTTCCTG
TATCTAGAATGCCTTCCTTTTGTAAACTTTACTAAACCCATATCACCTTG
TGAATGTATTATTAGGCTCCTCACTAATTGGTTTGTTATTGTTATTCGCC
TTCTGTGCGCCAATTGAAGCTAATATTTTGACCAGTGTTTTGTTCAAACT
AAACACCCAACGTATAAACATGCATAATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_e18.g1 MSMg01no202_e18.g1 CHROMAT_FILE:
MSMg01no202_e18.g1 PHD_FILE: MSMg01no202_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:03 2005
         (234 letters)



>mm_chr4_52239644_52240277
          Length = 634

 Score =  453 bits (234), Expect = e-132
 Identities = 234/234 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggttggaaaaagttttctttctataaactcaattctggttctaatatttcattttcctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ggttggaaaaagttttctttctataaactcaattctggttctaatatttcattttcctct 375

                                                                       
Query: 61  actcatatgtaatattttaaggggtgtgataagacatacttatattgtggtgttttctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 actcatatgtaatattttaaggggtgtgataagacatacttatattgtggtgttttctgg 315

                                                                       
Query: 121 tcctgaatcttcacattacatattgactgaatcagcatgatggaaattagaaatatttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tcctgaatcttcacattacatattgactgaatcagcatgatggaaattagaaatatttta 255

                                                                 
Query: 181 tagtactttactgtacttttctgtatcactaaaagcttaattataagcagttgt 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tagtactttactgtacttttctgtatcactaaaagcttaattataagcagttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)