BAC Information

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BAC

Clone NameMSMg01-202E19
Chromosome4 (Build37)
Map Location 155,504,686 - 155,504,912
singlet/doubletsinglet
Overlap geneEG667357
Upstream geneMorn1, Ski, 2610002J02Rik, Prkcz, Gabrd, 2010015L04Rik, Tmem52, Gnb1, Nadk, A530082C11Rik, Cdc2l1, Mmp23, Mib2, B930041F14Rik, Ssu72, EG381582, Atad3a, Vwa1, A230069A22Rik, E230028L10Rik, Mrpl20, Ccnl2, Aurkaip1, Mxra8, Dvl1, Tas1r3, BC002216, Cpsf3l, Pusl1, Centb5, Ube2j2, C1qdc2, B3galt6, Sdf4, LOC100043436, Tnfrsf4, Tnfrsf18, Ttll10, 9430015G10Rik
Downstream geneAgrn, LOC100038882, AW011738, LOC677185, 2310042D19Rik, Plekhn1, Klhl17, LOC100042378
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202E19.T7 (MSMg01no202_e19.b1)MSMg01-202E19.TJ (MSMg01no202_e19.g1)
ACCAG387509AG387510
length725731
length of high quality
(start - end)
---227 (130 - 356)
definitionCHROMAT_FILE: MSMg01no202_e19.b1 PHD_FILE: MSMg01no202_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:03 2005CHROMAT_FILE: MSMg01no202_e19.g1 PHD_FILE: MSMg01no202_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGAATCCGCXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGAGACC
CCGAGAGAACCCACTACCCCTTAAN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAAAAAAATTCACACCCGTCTCAGTCAGCCACCTCC
TGGATGAACACGGGCTTTTTCCCTCCAATCCCACATACACACAGAAGAGG
TGCGCCGGCCAGACCGGTGCCACCGGAAGGCTGTCGGCTACCGGCCCGTG
GAGGAGCACCGTGGAGGAGCACCTGCCGGGCGGAGCAGAGGCTGAGTCGG
ACCTGAAGGAGGGAGAACAAGCTGGTCAGCCTAGAGACAAAGGGTTTGCT
GTGACCAGTGGAGAAGACCATGCCTAGGAACTGCTGACCCCAAGCTACCA
GGTAAGGTTTTTTTGTATATCTGTCACCTCTGCAGTCTCAGGGTGAGGCT
GCTTCATGGAAGGGCACCCCTGAAGACAAAGAGCCAGTCCCGGGAGCAGC
ACAAGTCAGGGGAGGATAGATCCGAGGCTCTGTTGGACCTCGCCAAGACC
ACTGCTGCTTCCAGGGACCGGTGACGTCTCACGCAAGAAGGCTGGGGCTC
TCGTGATGTCGCAGTAATGTCAGATGATTCACAGACCCAGTGACGGCTCA
GCAATCTCTAAGCCGTTTTACTCACTCGCCTACTTGGGGCTGACCAGTGA
GGCAGGGAGATGGGTCATCTCTGCTGTAGCTGCTGGGCTCCATGCCTTAT
AACGTCCAGGCTTTTGGTAAATATCCCAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_e19.g1 MSMg01no202_e19.g1 CHROMAT_FILE:
MSMg01no202_e19.g1 PHD_FILE: MSMg01no202_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:04 2005
         (227 letters)



>mm_chr4_155504486_155505112
          Length = 627

 Score =  408 bits (211), Expect = e-118
 Identities = 223/227 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccacatacacacagaagaggtgcgccggccagaccggtgccaccggaaggctgtcggct 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 cccacatacacacagaagaggtgcgccggccagaccggtgccaccggaaggctgccggct 260

                                                                       
Query: 61  accggcccgtggaggagcaccgtggaggagcacctgccgggcggagcagaggctgagtcg 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accagcccgtggaggagcaccgtggaggagcacctgccgggcggagcagaggctgagtcg 320

                                                                       
Query: 121 gacctgaaggagggagaacaagctggtcagcctagagacaaagggtttgctgtgaccagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacctgaaggagggagaacaagctggtcagcctagagacaaagggtttgctgtgaccagt 380

                                                          
Query: 181 ggagaagaccatgcctaggaactgctgaccccaagctaccaggtaag 227
           ||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 ggagaggaccatgcccaggaactgctgaccccaagctaccaggtaag 427


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space:   134724
Effective search space used:   134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)