BAC Information

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BAC

Clone NameMSMg01-202J02
Chromosome4 (Build37)
Map Location 141,597,870 - 141,598,390
singlet/doubletsinglet
Overlap geneTmem51
Upstream geneCrocc, Necap2, LOC638991, Spata21, D4Ertd22e, Fbxo42, 6330545A04Rik, Arhgef19, Epha2, Gm693, Clcnka, Clcnkb, Hspb7, Gm694, Zbtb17, Spen, LOC100042951, B330016D10Rik, Fblim1, BC025833, Slc25a34, Plekhm2, Ddi2, Agmat, Dnajc16, Casp9, Ela2a, Ctrc, Efhd2, Fhad1
Downstream gene9030409G11Rik, EG665983, LOC546484, 6330411D24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202J02.T7 (MSMg01no202_j02.b1)MSMg01-202J02.TJ (MSMg01no202_j02.g1)
ACCAG387671AG387672
length744756
length of high quality
(start - end)
531 (47 - 577)427 (74 - 500)
definitionCHROMAT_FILE: MSMg01no202_j02.b1 PHD_FILE: MSMg01no202_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:25 2005CHROMAT_FILE: MSMg01no202_j02.g1 PHD_FILE: MSMg01no202_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTCAGTGTTGCCAATGCAGCACAGCCCGTGTCCCCAGAGCAAAA
CCCCTCTCCCAATTTTGCATTTGCCCAGGCAGTGGGTAATGCCGGGGCAG
TGGCCAGCAGCCTCTGAGGCACAGCAAGCCCTCACCTTGGTCCGGCAAGC
CCTCTTCTCAGTGAAGCTGAGGAAGGCACCAGGGAGCCTCAGTGAGTTCA
CCTCCCAGTTCCTAAACTGCAGAGCAGCCCAGCCGGGCTCAGGAGACCAG
CTCGGGCTCTCTGCCCTGCAGCAGCTGAGAAGTCCGTTTTCAGGGTTTTT
TTGTTTTGAAGTCACAGCGCTGGGAAATGGGTTATAGCAGTGGCTCTCAA
CCTGTGCGGCATGACCCCGCTGGATGTCTCACATCAGATATCCTGCATAT
CGGATATTTATGTGACGACTCATGACAGTAGCAAGATTACATTTGTGAAG
TAGCAACAAAGTAATTTTATGGTCGGGGGTCACCACAACACAAGCAACTG
TGTTAAAGGGTCGCAGCGTTGAGTGTGGGTCGTCGAGAACAGCTGGGCAA
CAGGTAGGCAGGGCTCCCAGCACTGAGCCAGTCCCCAGCCCTTACTGTCT
GGTTTCATTTTCACTGCTGGTCTTGAAGTTACAGTCCATGGAAACTTGGG
TCCGGCTGATAATGATAATGGGTGCCGGCGCTCACTCCCTGGCC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTCTGTAGACCAGGGTGGCCTTGGAT
TTAGGGTTCCACCCATCGTTGCCTCTAGGGAGTTCTGGGGATTACTGGTG
TGTGCCACCACTGCCTGGTTGAGAGCTTTTGATTCTTTTATTTCATATGT
ATGGGTGTTTCACTTCTCTGTATGTCTGGGCTCCATGTGTGTGCCTGGTA
CCCATGGAGGCCAGAAGTAGCTGTCAGATCGCCTGTTACTAGCGCAGATG
GCTGTGAGCAACCATGTATTTGCTCACAGGGGATTGAACTGGGAGAACAG
GCTGTGCTCTTAACCACCCAGGAAATGCCGCATTCAAAGCTCTAGAGAGA
CTGAAGATGTCACGTTGCTGGCTTTGAAGAAAGAGAAAGGGCTAGGCCTG
GTGGCACAGGCCTGGAATCTAGGATCTTGGGAGGCTGAGGCAGGAGGATC
ACAAGCTCAAGGACTGCCTTGTGCAGAGAGTCAGTTCGCTTTGTGAAATC
TTGTTTCAAAAGCAAAAGTAAGCCCGGCAGTGGTGGCGCACGTTTTTATC
CCTAGCACTCTGGAGACAGTATCAGGCACGTCTTTGATTTGACGCCCGTC
CTGTTCTACACAAAGAGTTTCAGGACAGCCCGGCAAGCCTTTCTTTACCT
CTGACTTCTCCCCCCTTTTCTTTTGCCCTTCCTTGCTCCCCTTTCTCCTC
TTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_j02.b1 MSMg01no202_j02.b1 CHROMAT_FILE:
MSMg01no202_j02.b1 PHD_FILE: MSMg01no202_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:25 2005
         (531 letters)



>mm_chr4_141597850_141598780
          Length = 931

 Score =  886 bits (458), Expect = 0.0
 Identities = 507/526 (96%), Gaps = 5/526 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctcagtgttgccaatgcagcacagcccgtgtccccagagcaaaacccctctcc 63
           |||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 541 ggaattcctcagtggtgtcaatgcagcacagcctgtgtccccagagcaaaacccctctcc 482

                                                                       
Query: 64  caattttgcatttgcccaggcagtgggtaatgccggggcagtggccagcagcctctgagg 123
           ||||||||||  ||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 caattttgcagctggacaggcagtgggtaatgccggggcagtggccagcagcctctgagg 422

                                                                       
Query: 124 cacagcaagccctcaccttggtccggcaagccctcttctcagtgaagctgaggaaggcac 183
             ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 421 tgcagcaagccttcaccttggtccggcaagccctcttctcagtgaagctgagggaggcac 362

                                                                       
Query: 184 cagggagcctcagtgagttcacctcccagttcctaaactgcagagcagcccagccgggct 243
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 caggaagcctcagtgagttcacctcccagttcctaaactgcagagcagcccagccgggct 302

                                                                       
Query: 244 caggagaccagctcgggctctctgccctgcagcagctgagaagtccgttttcagggtttt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caggagaccagctcgggctctctgccctgcagcagctgagaagtccgttttcagggtttt 242

                                                                       
Query: 304 tttgttttgaagtcacagcgctgggaaatgggttatagcagtggctctcaacctgtgcgg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tttgttttgaagtcacagcgctgggaaatgggttatagcagtggctctcaacctgtgcgg 182

                                                                       
Query: 364 catgaccccgctggatgtctcacatcagatatcctgcatatcggatatttatgtgacgac 423
           |||||||||| |||||||     |||||||||||||||||||||||||||||||||||||
Sbjct: 181 catgaccccgttggatgt-----atcagatatcctgcatatcggatatttatgtgacgac 127

                                                                       
Query: 424 tcatgacagtagcaagattacatttgtgaagtagcaacaaagtaattttatggtcggggg 483
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 126 tcatgacagtagcaagattacatttgtgaagtagcaacgaagtaattttatggtcggggg 67

                                                         
Query: 484 tcaccacaacacaagcaactgtgttaaagggtcgcagcgttgagtg 529
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  tcaccacaacacaagcaactgtgttaaagggtcgcagcgttgagtg 21


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)