BAC Information

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BAC

Clone NameMSMg01-202M23
Chromosome4 (Build37)
Map Location 133,185,162 - 133,185,394
singlet/doubletsinglet
Overlap geneZdhhc18
Upstream geneEya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn
Downstream geneLOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202M23.T7 (MSMg01no202_m23.b1)MSMg01-202M23.TJ (MSMg01no202_m23.g1)
ACCAG387820AG387821
length738734
length of high quality
(start - end)
194 (126 - 319)233 (128 - 360)
definitionCHROMAT_FILE: MSMg01no202_m23.b1 PHD_FILE: MSMg01no202_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:45 2005CHROMAT_FILE: MSMg01no202_m23.g1 PHD_FILE: MSMg01no202_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGCCTTCCTAGACTATGAAACAAGACTTTGTCTCAAAACAAGA
ACATCTTTTCCACAAGATTCTACATACTCCCTCACGTAGATGCTTTTGTG
TCTAATTATTCCTGAGGAGTTTCAGGATTTATGTTTGTTTGGTTTGGTTT
TAGTTTTTTGAGACAGGGTCTCTCTACATAGCCCTGGCTGTCCTGGAACT
CAGTACATAGACCAAGATGGCCTTGAACTCCCAGAGAGCCTTACAGCTGT
GTTGACCCCAGAGTCATATGATTTTCTGGTGGAGTGGTAAAGGCCTGTAA
TGCCAGCACTTGTTTTTTTGCCCCCCACAATCGGAAAGTTCACAGAGCAG
TGGGAGAGCACACACTTAATCCCAGAATTTGAAAGGCAGAGGCAGGTGGA
TCTCTATGAGTTCGAGGCTAGCCTGGTCTACAGAGTGAGTTCCAGGACAG
CCAGTACTGCACAGAGAATCCCTGTTTCTTTTTCTTTTTTTCTTTTTCAA
GATTTATTTATTGATTTATTGATTATACTGTAGTACACTGTATCTTTTCT
TCAAACACTCCCATAAGAAAGAATCCTATTTTTGTTTTCCGCATCTTTGT
TATTCCTCCACCGTGTTTTTTGCCATTTTTCATTCTATGATTCTTGTTTT
ATATTTTCCGTTTGTTTTTTACCTCCACTGATTCCTTA
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGTTGGCCAAGACCATAGAGA
AAGATCCTGTCAAAACAAATCTAACCAAACCCTGCTTGTCTGCGAATATG
TTGCTTGCCTTTACCCTGCTAAGTAATGAGCTTCTCTGAGGACGCAGACA
GCATCCCTTGCCCAGGAAATAGCTATCAAACAAATCGTGCTCCCCTCATG
GAGAGGAAGTAGCTACCACATCTTTTATTCAGTATTACAGACCAAACCTT
GTGCACAGTAGGTAAGCGCTTTATCACTAAGTCATCTCCTGCTATCTTCT
GAAGATTTGCTCTGGTCTACCCCCCCCCCCCCGCCAATCAGTCACTATAA
ATAACCCTTACAGGCTGGGGATACAGATAAAAGGTAGAATGCTGTCTACC
ACGCACAAAGCACCGAGCTCAACCCCCAGCAGCTCCAAGTAAGAACCATT
AACAATAATGATAATAATGACTATCAAATCAATACCTGCCATATAAGCCA
GACATGATGCTGCATGCCTACAATGGTGGTACTTGAGAGCCTGGCACCCT
GAGGTCAGTCTGGGCTACAAACAATAACGCTACCTTAAAAGCATTCATTC
TGCCGGGCACACTGACCCATATCTTTAATCTCAGCACTCAGAAACCCACG
CAGGTGCATCTTTGTGACTTTGAATTCCCGCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_m23.g1 MSMg01no202_m23.g1 CHROMAT_FILE:
MSMg01no202_m23.g1 PHD_FILE: MSMg01no202_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:46 2005
         (233 letters)



>mm_chr4_133184962_133185594
          Length = 633

 Score =  451 bits (233), Expect = e-131
 Identities = 233/233 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaccctgcttgtctgcgaatatgttgcttgcctttaccctgctaagtaatgagcttctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaccctgcttgtctgcgaatatgttgcttgcctttaccctgctaagtaatgagcttctct 260

                                                                       
Query: 61  gaggacgcagacagcatcccttgcccaggaaatagctatcaaacaaatcgtgctcccctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggacgcagacagcatcccttgcccaggaaatagctatcaaacaaatcgtgctcccctc 320

                                                                       
Query: 121 atggagaggaagtagctaccacatcttttattcagtattacagaccaaaccttgtgcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggagaggaagtagctaccacatcttttattcagtattacagaccaaaccttgtgcaca 380

                                                                
Query: 181 gtaggtaagcgctttatcactaagtcatctcctgctatcttctgaagatttgc 233
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaggtaagcgctttatcactaagtcatctcctgctatcttctgaagatttgc 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)