BAC Information

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BAC

Clone NameMSMg01-202P09
Chromosome4 (Build37)
Map Location 118,824,417 - 118,824,667
singlet/doubletsinglet
Overlap genenone
Upstream geneJmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1
Downstream geneZfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b, Hivep3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202P09.T7 (MSMg01no202_p09.b1)MSMg01-202P09.TJ (MSMg01no202_p09.g1)
ACCAG387914AG387915
length718717
length of high quality
(start - end)
253 (426 - 678)281 (77 - 357)
definitionCHROMAT_FILE: MSMg01no202_p09.b1 PHD_FILE: MSMg01no202_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:58 2005CHROMAT_FILE: MSMg01no202_p09.g1 PHD_FILE: MSMg01no202_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAACGTAGAGGAGAGTGACAGATTCAGTGAAGGACCCCAAGAACTT
GCCAGCAAGAGAAGCCAGCCCGACCTGTATCTGGGGTGTGGGTTTCTGCT
GCCTGTTACTTAATTGCCCGTCCAGAGAGACTCATTCTTTCCAGACTCTC
AATCCACACATCTATACTGCACTTGGCTGTAAAAGTCCCAGAGGTCAACC
TCTTGTCCCAGGCATGGCAAAAGAAAACGTCACCTTCCCTTGGCCTCAGA
GATCATTGAGAATAGACCCATAGTCTAGTAAGACTGATGAGAGGCAAGGA
TTGTTTTGTGTTAAGACCCCCCCCCGCGCCAGTCACATTCTCTTCTCAGC
TATATTGAGCCCACAGGAACAACTCCAACCTTTATGCAGGAGGAGAGAAG
GCCGAATGAATGGAGCCAACGTGAACAGACAGGCTAACAGAGAGTGGGGC
TTGAGTCTTTAGTCACCATGCCTGAAGCCAGCCTTTCACTGCAGAGCCAA
GAAACTGCCTTTCCCAGGGCTGAAATGAGCTGTTTAGCTAAAGATTCAAA
GCATGATGCGTATAAGCAAACCTGGATGAACTGTCCCCAGGTTACCTGTC
AGTAGCTATGTGTTTGGTGGCTGCGGAGGTGTGGCTGCCTGGCTGTTTCT
TTCCTTCTTTTCTCTTTG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGGAAGCGTGCCAGCCAGCTAAC
CTGAAATATGCAGCATGAGAGAAGCTGTCTCAGCATCAGGAAAGTGAGGA
CCGACATCTGGGACCCACACACAGAAACACAGGCACACCATATACACATG
CACACCATATACACAAAAATACTAAAATTTTGAAGGCACCAGGCACTTGG
GAAGCAGAGGCAAGTGTGTCTCTGAGTTTGAAGACAGCTGGTCTGCATAG
TTCCAGGCCACCCAGAGCTACACAGTGAGACTCTTGTCTCAAAAAACCTA
CACCTTGTATTGTGATCGCCCCCCCCCCTGTATTGATTGGGGTTAGGGAG
GATGCCAGGGTGCGCCAGGAAGAGTTTCCAAAGCTGAGCCTGAGGAGAGG
GGGACAAAGGAGAAGCTTTTTTGCAAAGGACATTCCTGGGATTTATTACC
TTGCATTCCTTAAAAGCAAAAACCAGAATTGTGAGGAGATTCGCCTGGTG
TTGGGGGAGGGCCTGTCCATCCTGGGGTGATTTTTTGTTGTTTCTTTTTT
TCTGAGATGATTTCTCTGTGTAGCCCTGGTTGTCCTAGCACTCTGTAGAC
CAGGTTGTCCTGGAACTAAGTGATTCACCTGCCTCTGCCTTCTGTATGCT
GGGTATAAAGGTGCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_p09.b1 MSMg01no202_p09.b1 CHROMAT_FILE:
MSMg01no202_p09.b1 PHD_FILE: MSMg01no202_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:58 2005
         (253 letters)



>mm_chr4_118824217_118824869
          Length = 653

 Score =  455 bits (235), Expect = e-132
 Identities = 247/251 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caacctttatgcaggaggagagaaggccgaatgaatggagccaacgtgaacagacaggct 60
           ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caacctttacgcaggagaagagaaggccgaatgaatggagccaacgtgaacagacaggct 260

                                                                       
Query: 61  aacagagagtggggcttgagtctttagtcaccatgcctgaagccagcctttcactgcaga 120
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 aacagagagtggggcttgggtctttagtcaccatgcctgaagccagcctttcactgaaga 320

                                                                       
Query: 121 gccaagaaactgcctttcccagggctgaaatgagctgtttagctaaagattcaaagcatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccaagaaactgcctttcccagggctgaaatgagctgtttagctaaagattcaaagcatg 380

                                                                       
Query: 181 atgcgtataagcaaacctggatgaactgtccccaggttacctgtcagtagctatgtgttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgcgtataagcaaacctggatgaactgtccccaggttacctgtcagtagctatgtgttt 440

                      
Query: 241 ggtggctgcgg 251
           |||||||||||
Sbjct: 441 ggtggctgcgg 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)