BAC Information

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BAC

Clone NameMSMg01-203A08
Chromosome4 (Build37)
Map Location 114,227,817 - 114,331,082
singlet/doubletdoublet
Overlap geneLOC666048
Upstream geneLOC242627, LOC100040625, A630098G03Rik
Downstream geneFoxd2, LOC100040736, Foxe3, Cmpk, Stil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203A08.T7 (MSMg01no203_a08.b1)MSMg01-203A08.TJ (MSMg01no203_a08.g1)
ACCAG387952AG387953
length745777
length of high quality
(start - end)
313 (46 - 358)254 (75 - 328)
definitionCHROMAT_FILE: MSMg01no203_a08.b1 PHD_FILE: MSMg01no203_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:03 2005CHROMAT_FILE: MSMg01no203_a08.g1 PHD_FILE: MSMg01no203_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,227,817 - 114,228,120)(114,330,834 - 114,331,082)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGGGAAGTAACGGCTTCAAGTTTCTGCATCCTTCAGCAGCTCCT
TTGTCTCTACCCCAAGTCATGTCCCCGCGATATAAAGCACCCTCCACCAC
CCCAACCACTTCCAGTGCAGAGTGTAGAGGCCAAGGGACTTGCCATGTGC
CCTAGAGAGATAGTGAGTTGGGCACTGGAGCCATGTGGTCCAGCTGCAGA
CGGAGTAGGTGAGGATGCCGTCGGGTCGTTGGAAAGATCAAGTCCATCCT
TGGGGCTGCCTGCACATCCCCGCCCCCAATTCCCTTCTCCTTTTACATTT
ATGAAATCCCCAACCATCTTCTGGAGAATTATTCTGAACAATTTTTATTT
TATTATTAAAGATTTGCCACCCCCCGCGCTCTTTTTAATTCACTCATTTA
TTCTCCCCCTATTCGTCTTCCCCTCCTCGCCCACTTTCTCACTTCCAGAG
AACCCGTCATACCATTGCGACCCCTGCCGACATGGCCGAGGTCTCCGACG
TCTACCTTCGTTTCCCATTCTGACCGTCATCTCCTTGTTCCTTCTTCTTC
TTTTCCTTGTTTTTTCCCGCTTTTCCTTTCCCCATTTTTTTTTTATCTCC
CTTCCTCCCCTTTTCTCCCCTACCTCTTGTTTTTTTTCCCCTCTTTTTCC
CTTTTTTTCTCCCCCCACTCCTCACCTTCGTTGTTTCTCCATTTT
CGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGGTCAGTGTTTATTTCTTCCTTC
TCTTCCCCACCATAGACCCTCTTTGCCTATGCCCTTTCCATTTGGGTATC
CATTCTTCCCATGATGCTTTGTGAAGGTTCCAGCCCCTTACGGGGATGCT
TCTTCCATCCCAGTGCCACCTGTCTGGATGGTCTTCCAGCACCTTCACTA
GCACACAGCTTCCTGTACAGCAGAGGGGAAGGATATCCTGCACCAACAGC
TACAACTTGCACGTATAATGAAACATGCTCAGAGAGTAGATCTGAGTAGA
GAGTTCCAAAGAGTGTTCTGCCGCCCCCCCCACCGCAGAAGGGAGTGACG
GCCGTTGTTTACCTTTCCCCCACACTTTTTGAAAGGTCTGCTCAGAGCTC
TGAGTGTGCAGCCTTCTTCCCTGCAGTTGTGTCCTACGTTTTTCCTGCCT
TACCATTGAGATAGCTTTCTCCGCCTTTTTTCCCACTATTTCTCGTCCCT
TCTCTCCCTTTTTTTCCTCTCCCTATCTTGCTCTCGTTATCAGTTATCGC
TTTATCCCTCCCCCCTCGTTTATCCTCCCACTACCCATGTTTCCCGCATA
AAACGACCTTTATCTGTACCTCCTTGTTAGTACCTTCCCATCGCCTCTCT
TCCCCATCCCTTTGCCAGTTTCCCCCCGCCCTGTCTTCCCGCCCTCTCCC
TTCCTNTCTCGTCTTTTCTCTCCATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_a08.b1 MSMg01no203_a08.b1 CHROMAT_FILE:
MSMg01no203_a08.b1 PHD_FILE: MSMg01no203_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:03 2005
         (313 letters)



>mm_chr4_114227613_114228325
          Length = 713

 Score =  487 bits (252), Expect = e-142
 Identities = 291/304 (95%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaggggaagtaacggcttcaagtttctgcatccttcagcagctcctttgtctcta 64
           |||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggggagggaaaggcttcaagtttctgcatccttcagcagctcctttgtctcta 264

                                                                       
Query: 65  ccccaagtcatgtccccgcgatataaagcaccctccaccaccccaaccacttccagtgca 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 265 ccccaagtcatgtccctgcgatataaagcaccctccaccaccccaaccactcccagtgca 324

                                                                       
Query: 125 gagtgtagaggccaagggacttgccatgtgccctagagagatagtgagttgggcactgga 184
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagtgtagagaccaagggacttgccatgtgccctagagagatagtgagttgggcactgga 384

                                                                       
Query: 185 gccatgtggtccagctgcagacggagtaggtgaggatgccgtcgggtcgttggaaagatc 244
           ||||||||||||||||||| || ||| ||||||||||||| |||||||||||||||||||
Sbjct: 385 gccatgtggtccagctgcaaacagagcaggtgaggatgccatcgggtcgttggaaagatc 444

                                                                       
Query: 245 aagtccatccttggggctgcctgcacatccccgcccccaattcccttctccttttacatt 304
           |||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||
Sbjct: 445 aagtccatccttggggctgcctgcgcatccccgcccccaactcccctctccttttacatt 504

               
Query: 305 tatg 308
           ||||
Sbjct: 505 tatg 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no203_a08.g1 MSMg01no203_a08.g1 CHROMAT_FILE:
MSMg01no203_a08.g1 PHD_FILE: MSMg01no203_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:03 2005
         (254 letters)



>mm_chr4_114330634_114331287
          Length = 654

 Score =  427 bits (221), Expect = e-124
 Identities = 242/249 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctggtcagtgtttatttcttccttctcttccccaccatagaccctctttgcctatgccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 449 tctggtcagtgtttatttcttccttctcttccccaccatagaccctctttgtctatgccc 390

                                                                       
Query: 61  tttccatttgggtatccattcttcccatgatgctttgtgaaggttccagccccttacggg 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 389 tttccatttgggtatccagtcttcccatgatgctttgtgaaggttccagccccctacggg 330

                                                                       
Query: 121 gatgcttcttccatcccagtgccacctgtctggatggtcttccagcaccttcactagcac 180
           ||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 329 gatgcctcttccatcccagtgccacctgtctgaatgggcttccagcaccttcactagcac 270

                                                                       
Query: 181 acagcttcctgtacagcagaggggaaggatatcctgcaccaacagctacaacttgcacgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 269 acagcttcctgtacagcagaggggaaggatatcctgcaccaacagctacaacttgtacgt 210

                    
Query: 241 ataatgaaa 249
           |||||||||
Sbjct: 209 ataatgaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)