BAC Information

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BAC

Clone NameMSMg01-205G04
Chromosome4 (Build37)
Map Location 145,213,936 - 145,214,590
singlet/doubletsinglet
Overlap geneOTTMUSG00000010965
Upstream geneGm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701
Downstream geneLOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205G04.T7 (MSMg01no205_g04.b1)MSMg01-205G04.TJ (MSMg01no205_g04.g1)
ACCAG389393AG389394
length731736
length of high quality
(start - end)
678 (45 - 722)654 (77 - 730)
definitionCHROMAT_FILE: MSMg01no205_g04.b1 PHD_FILE: MSMg01no205_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:15 2005CHROMAT_FILE: MSMg01no205_g04.g1 PHD_FILE: MSMg01no205_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:15 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAATCAAATCTCGCACTGGTCCCCATATGACAAATACCTACAAAGCT
CTCTAGAGATGCGTATCCAGTTCCCTGGAGAAAGGGAAACGAAATGGCAA
ATGGAGGAACAAGGGAGATAAGAAAGCATGAATGAATTTGAATTCGAGGA
GCTTTATTATGGCTTTTGCAAAGACAACCATCCCAATACACAAACTCCAG
AGACGGCCAAGGATCTACGGGGTTATTAAAAAAAAAAAAATCTGGCAACC
ATAAAATTAATTAAAACATCACCATGAACCCAATTCACAGGATCTCAAAC
TTCCTGATAATGGTAAGATATCCACAACAAAATTGGGAGAGTGGCGGCAG
AAAATGCACCCCTGCTCCACATGCCTGCCCTGCTCCTGCCCATTTACCAG
CCCAACAGCTCCTCTGACCTGGAAGGTGACAGGACCAGCTGCTCAATGTC
CTAGGAGGCCAGCACAGCAATTGCAGCTTAAAGAAGTTTTCAGGTTCCGC
AAACACTGAATTGTGAGAGGGACGGCAGAAAATGCACCCCTGCTCCACAC
CCCTGCCCAGCTCCTGCCCGTTCCCCAGTCCAACAGCTCCTCTGACCTGG
AAAGTGACAGGACCAGCTGCTCAATGTCCTAGGAGGCCAGCACAGCAACT
GCAGCTTAAAGAAGTTTTCAGGTTCCGCATN
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATACAGGAGAGAAACCTTACAAAT
GCAGTGGATGTGACAAATGCTTTACTCAAAAAAGCAGTCTGAGAATTCAT
CAGAGAATTCACACAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAA
ATGCTTTACTAAAAAAGGCAATCTGATAATTCATCAGAGAATTCATATAA
GAGAGAAACCTCACAAATGTAGTGAATGTGACAAATGCTTTACCCAAAAA
TCCTATCTTAATATTCATCAGAAAATTCATACAGGAGAGAAACTTTACAA
ATGTAGTGAATGTGACAAATGCTTTACCCGAAAATCCCATCTTGGTATTC
ATCAGAAAATTCATACAGCGACAGAAACCTTACAAATAGATTGTATGTGA
CAAATACAATACTCACAATGTCTGTCTTAGAAATCAAAAGTAATTTCATA
CAGTAGAGAATCTTTATAAATGATGTGAATGAGACAATCCTTTTCCAAGA
TGTATCATCTTGAAATTCATTAGAGAATACTTAGAGAAGACAAACTTTTC
AAATATATTGGGGGTATGAATCCTTTACTTTTGGCCTATTTCCTAAAATG
TAACAGTGAATACTTACAGGCTAGAAACTTAACTCATGCATTGTATGAAG
AAATATCTTTGACTTCATTTCAGGTCAGAGAGAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_g04.g1 MSMg01no205_g04.g1 CHROMAT_FILE:
MSMg01no205_g04.g1 PHD_FILE: MSMg01no205_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:15 2005
         (654 letters)



>mm_chr4_145213735_145214790
          Length = 1056

 Score =  752 bits (389), Expect = 0.0
 Identities = 594/667 (89%), Gaps = 25/667 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   atacaggagagaaaccttacaaatgcagtggatgtgacaaatgctttactc-aaaaaagc 59
           ||||||||||||||||||||||||| |||| |||||||||||||||||| | ||||   |
Sbjct: 202 atacaggagagaaaccttacaaatgtagtgaatgtgacaaatgctttacccgaaaattcc 261

                                                                       
Query: 60  agtctgagaattcatcagagaattcacacaggagagaaaccttacaaatgcagtgaatgt 119
           | ||| || ||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 262 a-tcttagtattcatcagagaattcatacaggagagaacccttacaaatgcagtgaatgt 320

                                                                       
Query: 120 gacaaatgctttactaaaaaaggcaatctgata--attcatcagagaattcatataagag 177
           ||||||||||||||  |||||  ||||||  ||  ||||||||||||||||||| | |||
Sbjct: 321 gacaaatgctttacccaaaaatccaatct--taatattcatcagagaattcatacaggag 378

                                                                       
Query: 178 agaaacctcacaaatgtagtgaatgtgacaaatgctttacccaaaaa-tc--ctatctta 234
           |||||||| | ||||| ||||||||||||||||||||||   |||||  |  |   || |
Sbjct: 379 agaaaccttataaatgcagtgaatgtgacaaatgctttaatgaaaaaggcagc---ctga 435

                                                                       
Query: 235 -atattcatcagaaaattcatacaggagagaaactttacaaatgtagtgaatgtgacaaa 293
            | |||||||||| |||||||||||||||||| | ||||||||| |||||||||||||||
Sbjct: 436 ga-attcatcagagaattcatacaggagagaatccttacaaatgcagtgaatgtgacaaa 494

                                                                       
Query: 294 tgctttacccgaaaatcccatcttggtattcatcagaaaattcatacagcgacagaaacc 353
           |||||||||||||||| ||||||| |||||||||||||||| ||||||| || |||||||
Sbjct: 495 tgctttacccgaaaattccatcttagtattcatcagaaaatccatacag-gagagaaacc 553

                                                                       
Query: 354 ttacaaatagattgt--atgtgacaaatacaatactca-caatgtctgtcttagaaatca 410
           |||||||||| || |  ||||||||||||||||||||| | ||||| |||| ||||||||
Sbjct: 554 ttacaaatag-tt-tacatgtgacaaatacaatactcatc-atgtcagtctgagaaatca 610

                                                                       
Query: 411 aaagtaatttcatacagtagagaatctttataaatgatgtgaatgagacaatccttttcc 470
             ||| | ||||||||||||||||||||||||||||| ||||| ||||||||||||| ||
Sbjct: 611 tcagttacttcatacagtagagaatctttataaatgaagtgaacgagacaatcctttacc 670

                                                                       
Query: 471 aagatgtatcatcttga-aattcattagagaatacttagagaagacaaacttttcaaata 529
           || || ||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 aaaatatatcatctt-ataattcattagagaatacttagagaagacaaacttttcaaata 729

                                                                       
Query: 530 tattgggggtatgaatcctttacttttggcctatttcctaaaatgtaacagtgaata--c 587
           |||||  |||||||||||||| |||||||||||||||||| ||| ||||||||||||  |
Sbjct: 730 tattgtaggtatgaatcctttccttttggcctatttcctagaatataacagtgaatatac 789

                                                                       
Query: 588 ttacaggctagaaacttaactcatgcattgtatgaagaaatatctttgacttcatttcag 647
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 ttacaggctagaaacttaactcatgcattgtatgaagaaatatctttgacttcatttcag 849

                  
Query: 648 gtcagag 654
           |||||||
Sbjct: 850 gtcagag 856



 Score =  393 bits (203), Expect = e-113
 Identities = 285/315 (90%), Gaps = 9/315 (2%)
 Strand = Plus / Plus

                                                                       
Query: 69  attcatcagagaattcacacaggagagaaaccttacaaatgcagtgaatgtgacaaatgc 128
           ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 18  attcatcagagaattcatacaggagagaacccttacaaatgcagtgaatgtgacaaatgc 77

                                                                       
Query: 129 tttactaaaaaaggcaatctgata--attcatcagagaattcatataagagagaaacctc 186
           |||||  |||||  | ||||  ||  ||||||||||||||||||| | ||||||||||| 
Sbjct: 78  tttacccaaaaatccgatct--taatattcatcagagaattcatacaggagagaaacctt 135

                                                                       
Query: 187 acaaatgtagtgaatgtgacaaatgctttacccaaaaatcctatcttaatattcatcaga 246
           |||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||
Sbjct: 136 acaaatgtagtgaatgtgacaaatgctttacccacaaatcccatcttaatagtcatcaga 195

                                                                       
Query: 247 aaattcatacaggagagaaactttacaaatgtagtgaatgtgacaaatgctttacccgaa 306
            |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 196 gaattcatacaggagagaaaccttacaaatgtagtgaatgtgacaaatgctttacccgaa 255

                                                                       
Query: 307 aatcccatcttggtattcatcagaaaattcatacagcgacagaaaccttacaaat--aga 364
           ||| ||||||| |||||||||||| ||||||||||| || |||| ||||||||||  || 
Sbjct: 256 aattccatcttagtattcatcagagaattcatacag-gagagaacccttacaaatgcag- 313

                          
Query: 365 ttgtatgtgacaaat 379
            || |||||||||||
Sbjct: 314 -tgaatgtgacaaat 327


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 3
Length of query: 654
Length of database: 1056
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1046
Effective search space:   673624
Effective search space used:   673624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)