BAC Information

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BAC

Clone NameMSMg01-206G12
Chromosome4 (Build37)
Map Location 56,121,825 - 56,165,398
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC670211, Rad23b, LOC666953, LOC100041348, Klf4
Downstream geneActl7b, Actl7a, Ikbkap, BC026590, Ctnnal1, D730040F13Rik, 6430704M03Rik, Epb4.1l4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206G12.T7 (MSMg01no206_g12.b1)MSMg01-206G12.TJ (MSMg01no206_g12.g1)
ACCAG390033AG390034
length728731
length of high quality
(start - end)
169 (148 - 316)454 (165 - 618)
definitionCHROMAT_FILE: MSMg01no206_g12.b1 PHD_FILE: MSMg01no206_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:34 2005CHROMAT_FILE: MSMg01no206_g12.g1 PHD_FILE: MSMg01no206_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,121,825 - 56,121,993)(56,164,945 - 56,165,398)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTTCGATTGCTGAAAACCCCATCCACAGATAGATAAAGGGAGAG
ACTAAATGAATGTCCAGATTTGTCATTCTACTGGAGACAAACGGAGGAAA
TTTAATAGACAAAATGCTCATTCATTATATGTTGATGTTTCAGCGGATCT
TATTCCTGAACAACCACTATAGATGCATAACCACACAGGAATATCTCCTA
TCTTAGTACTTCTATGTCTCTCACATTGCTTATGAATATGAATAAAAAAG
ACAATACTTCTTATAGCATGAGATAGCATTTGCCATGTTACAGTCCATCT
TCTGTTCTTTTCGATATTGGATGCAAACTACTTGTATTAGAATTAGAAAT
TACTAAATTGGAGGCCCACCCATATGGAATCAAATATAGATGTGGAAGAG
CTTGAGTTGGCCTGGAGGAGAAAGTGAGAAATCATCGGGATGTGACACAA
ACACAAAGGACTTTCCACGGGAGGTAAGTGGACCTGTTCAATGCAGTGAC
CAACCACACAGAGAGAGAAGTCATCCTTGGGCTGGGAAAGACCATGCTGA
ATACAAAGTACAACAGGAAACATGATATGTCATAAGCAAGACTTCTAGAG
GAAGTGTGAGGTTCGCCAAGTGGTTAGGGCTGATATGTAAAGAAGGCTAG
ATACCTTACTGTATGGAAAAGTGCTTTG
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTGAATCCAGTTTTGAGCATTAT
TCCCTTGGGTGTTTACTAATAGCAGGGTTCATATTTAGCTAACACATGCT
GGACAGTGGAATATAGGAAGTCCAGATAGGGTAAATAGCTGCTAATGGCT
CTCACCAAGTGACCTTCACTCTCTCACAGTCAGAGAAGGAGAAGGGTCTT
TTGAAGGATTTGTCCACATCATACTGCTCAGTGTGTGTTTGCTGTTGTTG
TGTGCAGTAAAGCCAACCCTCCCCCAACACAGCTGATGTCTAATCACTGA
GATCAGTAACTGTTACTTTGTACGGCAAAAGAGAGCTCACAGATGTGACA
ACTAAGGGTCTGGGCAAACCCACCAACTCCCAAGGTAATCATGTGTGTCT
ATTTCCCACATCTATTTGTATGTGTAGAATATAGTGTAGTTAACAGGGGT
GTAAGCATGTGTAATTACACATGCACTTGGAGGCCAGAGGTCAAGCTCTT
TCTCAATCATTCTTCACATTTATTTATTTGTTTGATTGTTTGATTTGAGA
CAGGGTCTCTCTCAGCTGGCCAGCTGAGCTCCATATATCCTCTTCTTGCT
ACCCTAGTAGTAGGATTCTAGATGGCACTGCCAGTCCCAGCAGGCAATCC
CTATTAAGCGTCTCAAGATAGCACTGCAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_g12.b1 MSMg01no206_g12.b1 CHROMAT_FILE:
MSMg01no206_g12.b1 PHD_FILE: MSMg01no206_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:34 2005
         (169 letters)



>mm_chr4_56121625_56122193
          Length = 569

 Score =  304 bits (157), Expect = 2e-87
 Identities = 166/169 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatttaatagacaaaatgctcattcattatatgttgatgtttcagcggatcttattcct 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 aaatttaatagacaaaatgctcattcattatatgttgatgtttcagtggatcttattcct 260

                                                                       
Query: 61  gaacaaccactatagatgcataaccacacaggaatatctcctatcttagtacttctatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaacaaccactatagatgcataaccacacaggaatatctcctatcttagtacttctatgt 320

                                                            
Query: 121 ctctcacattgcttatgaatatgaataaaaaagacaatacttcttatag 169
           |||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctcagattgtttatgaatatgaataaaaaagacaatacttcttatag 369


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no206_g12.g1 MSMg01no206_g12.g1 CHROMAT_FILE:
MSMg01no206_g12.g1 PHD_FILE: MSMg01no206_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:35 2005
         (454 letters)



>mm_chr4_56164576_56165429
          Length = 854

 Score =  808 bits (418), Expect = 0.0
 Identities = 445/454 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaagtccagatagggtaaatagctgctaatggctctcaccaagtgaccttcactctct 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 aggaagtccagatggggtaaatagctgctaatggctctcaccaagtgaccttcactctct 764

                                                                       
Query: 61  cacagtcagagaaggagaagggtcttttgaaggatttgtccacatcatactgctcagtgt 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 cacagtcagaaaaggagaagggtcttttgaaggatttgtccacatcatactgctcagtgt 704

                                                                       
Query: 121 gtgtttgctgttgttgtgtgcagtaaagccaaccctcccccaacacagctgatgtctaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 gtgtttgctgttgttgtgtgcagtaaagccaaccctcccccaacacagctgatgtctaat 644

                                                                       
Query: 181 cactgagatcagtaactgttactttgtacggcaaaagagagctcacagatgtgacaacta 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 643 cactgagatcagtaactgttactttgtatggcaaaagagagctcacagatgtgacaacta 584

                                                                       
Query: 241 agggtctgggcaaacccaccaactcccaaggtaatcatgtgtgtctatttcccacatcta 300
           |||||||||||||||  |  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 agggtctgggcaaacttagtaactcccaaggtaatcatgtgtgtctatttcccacatcta 524

                                                                       
Query: 301 tttgtatgtgtagaatatagtgtagttaacaggggtgtaagcatgtgtaattacacatgc 360
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 523 tttgtatgtgtagaatatagtgtagttaacaggggtataagcatgtgtaattacacatgc 464

                                                                       
Query: 361 acttggaggccagaggtcaagctctttctcaatcattcttcacatttatttatttgtttg 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 463 acttggaggccagaggtcaagctctttctcaatcattctccacatttatttatttgtttg 404

                                             
Query: 421 attgtttgatttgagacagggtctctctcagctg 454
           ||||||||||||||||||||||||||||||||||
Sbjct: 403 attgtttgatttgagacagggtctctctcagctg 370


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)