Query= MSMg01no206_i20.b1 MSMg01no206_i20.b1 CHROMAT_FILE:
MSMg01no206_i20.b1 PHD_FILE: MSMg01no206_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:46 2005
(284 letters)
>mm_chr4_76112358_76113041
Length = 684
Score = 514 bits (266), Expect = e-150
Identities = 278/282 (98%)
Strand = Plus / Plus
Query: 1 tattttatcacagcaacagaaataaaaatagaacatgatgtaagtgccctcttcttcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattttatcacagcaacagaaataaaaatagaacatgatgtaagtgccctcttcttcaaa 260
Query: 61 taaaacattttgttatattttcctcttacttggattgtataaagtctaactagcaagcca 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 taaaacattttgttatattttcctcttacttggattgtataaagtctaactagccagcca 320
Query: 121 ctttattctgatatatcagtgagtgatattgtttttaggagaactgagtccagaatttag 180
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 321 ctttattctgatatatcagtgagtgttattgtttttaagagaactgagtccagaatttag 380
Query: 181 ctattatatgtgtcttccactgctgtatgatagtgatatacaactatctatctatctatc 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 ctattatatgtgtcttccactgctgtatgatagtgatatacaactgtctatctatctatc 440
Query: 241 tatctatctatctatctatctatctatctatctatctatcta 282
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatctatctatctatctatctatctatctatctatctatcta 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no206_i20.g1 MSMg01no206_i20.g1 CHROMAT_FILE:
MSMg01no206_i20.g1 PHD_FILE: MSMg01no206_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:46 2005
(569 letters)
>mm_chr4_76257371_76258339
Length = 969
Score = 876 bits (453), Expect = 0.0
Identities = 530/571 (92%), Gaps = 29/571 (5%)
Strand = Plus / Minus
Query: 18 acatcaggtagcatttagaccatgaatcatggccctctacttaggaggtggagagaaaac 77
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 969 acatcaggtagcatttaggccatgaatcatggcactctacttaggaggtggagagaaaac 910
Query: 78 aaatatttaaagt--------acacacacacacacacacacacacacacatttatatcag 129
||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 909 aaatatttaaagtacacacacacacacacacacacacacacacacacacatttatatcag 850
Query: 130 gccagaattcctcttcacaacattagtacagaaaaaccttgctccagtttttaataagca 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 gccagaattcctcttcacaacattagtacagaaaaaccttgctccagtttttaataagca 790
Query: 190 gtaacgcagcataacacaatcaattttgctaagagctttcacacaaacaggaagaaatct 249
|||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gtaacg----------caatcaattttgctaagagctttcacacaaacaggaagaaatct 740
Query: 250 aagctttccaaaa--aaacaa----aaaaaacaaaa----aaacaaactaacaaac-aaa 298
||||||||||||| |||||| ||||||||||| |||||||| ||||||| |||
Sbjct: 739 aagctttccaaaacgaaacaaaaacaaaaaacaaaaacataaacaaacaaacaaacaaaa 680
Query: 299 caaaaaaaaacaggcaaatacatcttacaagaatttgtcctggaatagcaaaacttggaa 358
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 679 aaaaaaaaaacagggaaatacatcttacaagaatttgtcctggaataggaaaacttggaa 620
Query: 359 aggtccatgtggtcataattgctggttgacttctttcacacatcatggttgtgaatgata 418
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aggtcaatgtggtcataattgctggttgacttctttcacacatcatggttgtgaatgata 560
Query: 419 tgtgacaggaaggagtttgctctttggagtaaggaacctgaataaaaataatgaatgagg 478
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgtgacaggaaggagtttactctttggagtaaggaacctgaataaaaataatgaatgagg 500
Query: 479 gcagggctgctcagaggtatggtacaggagaaggtttagtgcagatatgagggaaagcac 538
|||||||| ||| ||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 499 gcagggctactcggaggtatggtagaggagaaggtttagtgtagatatgagggaaagcac 440
Query: 539 agccagaggcatctgacagagcccagactga 569
|||||||||||||||||||||||||||||||
Sbjct: 439 agccagaggcatctgacagagcccagactga 409
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 8
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
