BAC Information

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BAC

Clone NameMSMg01-206J05
Chromosome4 (Build37)
Map Location 12,512,070 - 12,512,418
singlet/doubletsinglet
Overlap genenone
Upstream geneE130016E03Rik, LOC100039862, Gem, Cdh17, Ppm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
Downstream geneOTTMUSG00000004461, LOC100039988
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206J05.T7 (MSMg01no206_j05.b1)MSMg01-206J05.TJ (MSMg01no206_j05.g1)
ACCAG390140AG390141
length725730
length of high quality
(start - end)
318 (46 - 363)349 (382 - 730)
definitionCHROMAT_FILE: MSMg01no206_j05.b1 PHD_FILE: MSMg01no206_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:47 2005CHROMAT_FILE: MSMg01no206_j05.g1 PHD_FILE: MSMg01no206_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGATATTTCCAAGACATTTATCATGAATGGGTGTTGGATCTTGT
CAAATGCTTTCTCTGCTTCTACCACAATGATCATGTGGTTTTTGGCTTTG
AGTTTGTTTATACCATGGATTACGTTCATGGATATCCTTATATTAAATCA
TCCCTGCATCCCTGAAATAAAACTTACTTGGTCAGGATGGATGATTGTTT
TAATGTGTTCTTGGATTCGGTTAGGAGAATTTTATTGAGTATTTTTGCAT
CGATATTCATAAGGGAAATTGGTCTTAAGTTCTCTATCTTTGTTAGATCT
TTCTGTGATTTAGGTATCAGAGTACTTGTGGCTTCATAGAATGAGTTGGG
TAGAGTTCCTTCCCACCCCATTTTGTGGAATAGTTTGTGCAGAACTGGAA
TTAGATCTTCTTTGAAGGTCTGATAGGACTTTGCACTAAACCCATCTGGT
CCTGGGCTTTTTTTGGTTGGGAGACTATTAATGACTGCTTCTATTTCTTT
AGGGGATATCGGACTGTTTATACTGTTAACTTGATCCTGGCTTAACTTTG
GTACCTGGTATCTGTCTAGAATTTTGTCCATTTCGTCTTGATTTTCCTGT
TTTGTATAAGGATCCGATGGTCTTTTGGTTTTTCTCAGCCTCTGCCGTCT
TTCCCCCTTTTTCCTTTCTGATCTA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAATTATTTAACATCAAGCCAGG
GCTTATTGGATCTTACTTTATTCACTGAGAAAACACTTCAAGAATGGGGC
TCAACTCCAGAATCCAAGCCTCTTGTTGATATAGTTGGCCCATGGAGAAT
AGGAGTAGTGCCTTATCAGACATCTTCAATTGGCAGAGTTCCAGGTCTTT
GTCTCTTACTGGAAATTGTGATAGACTGAAGTTTAAAATTTGTTAATTAT
TTCTGGAAATTTTGAATAGTGTAGTGAAGGTTTTTAAAATACTCTCCCTT
TTAATTTTATCATTAATGTGAAACAGTACCAAGGAAGAGATTTTAAGTTG
AAGATGCTTGACCCTACCACCATTTCCTATAATTCAAAAGTCAAATCAAA
CAGAAAACACATAAGGGAGACAGAGACATTTGTCGATGGACTATTCTTAT
TATTCATGTAGATATCTGGCAGTGTCAAGATACAAGATTTAGTAAATGGG
ATTCCAAAAGACATTGAATGACAGAAGTATTTTAACAAATATGTATGAAA
ATCATACATTTTTATGGAGTTTTGTATGATGGTTTTCCATTGAAGAACAG
TGCAATACCAATGCATACCTCTTTGTTTGAGCCTCTATCTCTGATCTATC
TGATAAATTCAGGGTATCCACCCACTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_j05.g1 MSMg01no206_j05.g1 CHROMAT_FILE:
MSMg01no206_j05.g1 PHD_FILE: MSMg01no206_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:47 2005
         (349 letters)



>mm_chr4_12511870_12512618
          Length = 749

 Score =  636 bits (329), Expect = 0.0
 Identities = 344/349 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggaagagattttaagttgaagatgcttgaccctaccaccatttcctataattcaaaagt 60
           |||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||
Sbjct: 201 aggaagagattttaagttgaagatgcttgaccctacaattatttcctataattcaaaagt 260

                                                                       
Query: 61  caaatcaaacagaaaacacataagggagacagagacatttgtcgatggactattcttatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaatcaaacagaaaacacataagggagacagagacatttgtcgatggactattcttatt 320

                                                                       
Query: 121 attcatgtagatatctggcagtgtcaagatacaagatttagtaaatgggattccaaaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attcatgtagatatctggcagtgtcaagatacaagatttagtaaatgggattccaaaaga 380

                                                                       
Query: 181 cattgaatgacagaagtattttaacaaatatgtatgaaaatcatacatttttatggagtt 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattgaatgacagaagtattttcacaaatatgtatgaaaatcatacatttttatggagtt 440

                                                                       
Query: 241 ttgtatgatggttttccattgaagaacagtgcaataccaatgcatacctctttgtttgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgtatgatggttttccattgaagaacagtgcaataccaatgcatacctctttgtttgag 500

                                                            
Query: 301 cctctatctctgatctatctgataaattcagggtatccacccactccct 349
           |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 cctctatctctgatatatctgataaattcagggtatccacccactccct 549


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)