Query= MSMg01no206_m23.b1 MSMg01no206_m23.b1 CHROMAT_FILE:
MSMg01no206_m23.b1 PHD_FILE: MSMg01no206_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:06 2005
(690 letters)
>mm_chr4_33463497_33464586
Length = 1090
Score = 772 bits (399), Expect = 0.0
Identities = 458/479 (95%), Gaps = 4/479 (0%)
Strand = Plus / Minus
Query: 6 gatttaaaaggcaattacataaaaagtgattttttttcctttgaaacatctcagcagtat 65
|||||||||||||| || | ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 476 gatttaaaaggcaaataaacaaaaagtgatttttttttctttgaaacatctcagcagtat 417
Query: 66 cttaaagtacttgttacgaccaggaaacaataggttttgcattttaaacattgatagcag 125
|||||||||| |||| |||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 416 cttaaagtacaagttatgaccaggaaacaataggttttgcattttaaacgttgatagtag 357
Query: 126 gaatagtcagaattaagttttcaaagtgacagtatcaaattgcagagaatgtctctgatg 185
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gaatagtcagaaataagttttcaaagtgacagtatcaaattgcagagaatgtctctgatg 297
Query: 186 tggctcttagtggagtgcttgcccagcaagtgaaaaggcttggttctgccaacattcaac 245
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 296 tggctcttagtggagtgcttgcccagcaagtgagaaggcttggttctcccaacattcaac 237
Query: 246 caggcgtggtcatccatacctataaatcctagatc-gaagttcaatatcatcctcagtta 304
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 236 caggcgtggtcatccatacctataaatcctagatcagaagttcaatatcatcctcagtta 177
Query: 305 tagagggagtgagggccagtctagacttgatagataataggtaggtaggcagacaggcag 364
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 176 tagagggattgagggccagtctagactagatagataataggtaggtaggcagacaggcag 117
Query: 365 acaggcagatataaatgtatacctataaatattatatagattttttttaaataaaattaa 424
|||| | |||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 116 acag---gttataaatgtatacctataaagattatatagattttttttaaataaaataaa 60
Query: 425 gtcactctaacaaaacttcaaactggagaagactggtccaaacaacagaatgaagatgc 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 gtcactctaacaaaacttcaaactggagaagactggtccaaacaacagaatgaagatgc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space: 734400
Effective search space used: 734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no206_m23.g1 MSMg01no206_m23.g1 CHROMAT_FILE:
MSMg01no206_m23.g1 PHD_FILE: MSMg01no206_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:06 2005
(290 letters)
>mm_chr4_33445754_33446443
Length = 690
Score = 542 bits (280), Expect = e-158
Identities = 289/294 (98%), Gaps = 4/294 (1%)
Strand = Plus / Plus
Query: 1 ttgatggagcatgaaactgagtactggggaggcttttctccaggcttcttgagaggcttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ttgatggagcatgaaactgagtactggggaggcttttctccaggcttcttgagaggcttg 256
Query: 61 cagtccatgtgctgtgggtggg----gcttcctttagggtttttgtacctgggagtcatt 116
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 257 cagtccatgtgctgtgggtgggtggggcttcctttagggtttttgtacctgggagtcatt 316
Query: 117 gagcttcttttatttgtaaatttatcattttcacttcaagtgtagaaatgttcattattg 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gagcttcttttatttgtaaatttatcattttcacttcaagtgtagaaatgttcattattg 376
Query: 177 ttgctaccatcctcctctggacagccactcatgcttttttctttaatgttttctctcagt 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ttgctaccatcctcctctggacagccactcatgcttttttctttaatgttttctctcagt 436
Query: 237 agtttctcttcatttattttcttttacccttcctcactacatagccatggcttg 290
|||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 437 agtttctcttcatttatttttttttacccttcctcactacatagccatggcttg 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
