BAC Information

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BAC

Clone NameMSMg01-207G07
Chromosome4 (Build37)
Map Location 5,166,913 - 5,167,296
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039297, LOC622019, Impad1, LOC100039338
Downstream gene1700012H17Rik, LOC669309, 3110003A22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207G07.T7 (MSMg01no207_g07.b1)MSMg01-207G07.TJ (MSMg01no207_g07.g1)
ACCAG390636AG390637
length1,2151,276
length of high quality
(start - end)
469 (81 - 549)389 (73 - 461)
definitionCHROMAT_FILE: MSMg01no207_g07.b1 PHD_FILE: MSMg01no207_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:30:16 2005CHROMAT_FILE: MSMg01no207_g07.g1 PHD_FILE: MSMg01no207_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:30:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGCATGCGTCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTAA
TTCTAGGCTTGTTCTCCCTTATAATACTCCAGGTGACGTGCTTTTGGTTT
CTTTTCCTATTGTGACACTGACACATTTTACCTTATCATTGTTTGTTAAA
GATACTTTGTTTTTTCTCCAATGTGTAATTTTGGCTTCTCTCTTAAAAAT
CAGGAGGTTTATGTATGGATCTTTAATTACATGCCATTACCCCGAATATC
TTCTTATTACAACACCATACTGTTTTGTTACTGTGACTCTATGGTAAGAC
TTAAAGGAAAAATTGTGATGCCTTGCACTGCTACATAGTTTTCAGTTAAT
TTTGAGTTTTGTGTTTCTTTTGTGAAATTTTTAAGATTTTAATTTTTTTC
TGTGAATAATTGGGTTCAAATTTTGATGTGTATTGTGCTGAATCTGTAGA
TTGCATCTGACAGTACAGCCATGTTCACACGGTTAGAACTACCAGCCTCT
GGGCACGGAGACCTTTCCATCTTTTACTGTCTTCAATCAGTTTCTTGGGT
ATTTGTTTTTCCTGGAATAGCTATTTAATGAAGAAAATTAGTCCATGGCT
TAAAAACAAAACTACCAACCATTTTAAGGTTTTCATCAGACAAGGATTTC
GCTTCCTTGTTTAGATTTATTCCAAATAAAATTTAAGGTTTCTGTGGAAT
GAATTTTCCCTTCGATTATTTTCCCATTATATCTGTCACTTTTAATTTAT
TAATCCTGCATATGTTTATATATTATTTTATTCTTTTTTTTTACTTTATT
TTCTTTTTATTTTTACTCTATCCTCAAAATTAATTTTTTCTCACTTTTAC
ACCAACATATTTTTTCTTTTATATTTTCCTTCTCCCCTCCTACTTATCTA
CTTTTTTTTTTACATTTTTTCTATTCTTTATCTTTATTTTTTTTTATTTT
ACATCAATTCTTCTTCACTAAAAATTCTCTTCATTTTTTACTCACTATTT
TCTTTATAATTCTCTATCTTATACAATTTTAATTCTCTTTTTCCCTTTCT
TCTTCTCTATACATACAAATTTCTATTTTCATTTATATTCTCTCTTCTAC
TATAATGTCTTTACCTTTCTATTATAATCTTTCATATACTATTCTCTTTT
CTCCACCCCTATCTCTCTCTTTCCCTTATTAATTATCATTTCTTTCATCT
TCTATGTTCATTTTT
TTTTTTGAGATGTGTAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATGATCAGGCAAGAAAACATCCACATCC
TGACTCAAATTATGTGTGAATCAATCAACCAACCAACCAATTAATCAATA
AAATATGATTAGGAAGATTGAGATAAGTGCCAATGGCTGTCACAAGCCTT
ACATGTGCTTGATCTTAGCAGGCACTCACAAGGGGGTTGTCACACAAGGG
GACTGCCACTCAACCTAAGAAATATGGGCAGACACCTGCCAGTTCAACAC
GTAAATGTAATAAATTGTGCCTTGTGCCATTCTCCTTCAGATACTAAATA
TCAAATACTCTTTACATTTTCAAATGTAAAGAGGCAGGGTTTTTGCAGAT
TATTGCCTTTAATTTTTAATAAATTCAGAGAAAAAATGGCTACAGGAAAT
GTAGTTTATATTTAATGACCCGATACTTAGATATAGTCATGAAATTTTGA
GTTTTTTATTTGAATTCTTTTAAGACTTTCCTACATGAATACTCCACTGA
TATTTCCCCATTCCTCTAAACCCTCTAACTAACCCATGCTTCCTAACTCC
TTTCCATGCTGATTATTGTTATATTTCACAGGCTTTCCTACAGGTTAGGG
GTACTGATTGTCATTCTTCCTTGGTAGCTTGCATGGCACCTGCTATCCTG
TGAGAGCTAGACTTCAGTGAAAAGGTTTCCAGGACTTTTTCAGCTTGATT
CCTCAAGTCCCACATCTAAAGTATGAAAACCACTTTGGCCCCAACTAAAA
ATGGATTATTTCCATATCTGTCACTGGAAATTTTGTGTTTTATTGTTTGC
TTTTTTTAATCATCATTATATTCTTTCTTTTTTATTCCTATAACTCTTTT
TTCATCTATTTACATTCTCTTTTTCTTTCATTTTCTTTTAACTACTTCTA
CTTTTATTTTCATTCTTTTCTCATTTTTTTTTTTTTTCTCTTCTTCTCTT
CTTTCTTTATTCTTTCCTTTTTATTTTTTTTTTTTCTCTTCTTTTCTTCA
TTCCTTTTATTTACTACTTTACTCTCTTTATATTCTTCTTATATCTTCTC
TTTTCTTTCTCCCCCTCTTTATTATCTTTTATTAATTCTTATCTATTTAC
TTAATTTTTTTCTATTTTTCTTTAACTCTTTCAACTATCTCATTCACTTT
CTTTTATCTTTTCCTTTCTATTTCTTTATACTACTTATCTCCTTTTCTTA
CTTTTTTATATTTCTTCTTCTTACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_g07.g1 MSMg01no207_g07.g1 CHROMAT_FILE:
MSMg01no207_g07.g1 PHD_FILE: MSMg01no207_g07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:30:16 2005
         (389 letters)



>mm_chr4_5166708_5167496
          Length = 789

 Score =  696 bits (360), Expect = 0.0
 Identities = 378/384 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   caggcaagaaaacatccacatcctgactcaaattatgtgtgaatcaatcaaccaaccaac 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 caggcaagaaaacatccacatcctgactcaaattatgtgtgaatcaatcaaccaaccaac 265

                                                                       
Query: 66  caattaatcaataaaatatgattaggaagattgagataagtgccaatggctgtcacaagc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 266 caattaatcaataaaatatgattaggaagattgagataagtgccaatggatgtcacaagc 325

                                                                       
Query: 126 cttacatgtgcttgatcttagcaggcactcacaagggggttgtcacacaaggggactgcc 185
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 326 cttacatgtgcttgatcttagcaggcactcacaagggggctgtcacacaaggggactgcc 385

                                                                       
Query: 186 actcaacctaagaaatatgggcagacacctgccagttcaacacgtaaatgtaataaattg 245
           ||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 386 actcagcctaagaaatatgggcagacacctgccagttcaacacttaaacgtaataaattg 445

                                                                       
Query: 246 tgccttgtgccattctccttcagatactaaatatcaaatactctttacattttcaaatgt 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tgccttgtgccattctccttcagatactaaatatcaaatactctttacattttcaaatgt 505

                                                                       
Query: 306 aaagaggcagggtttttgcagattattgcctttaatttttaataaattcagagaaaaaat 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 506 aaagaggcagggtttttgcagattattgcctttaatttttaataaattcagagcaaaaat 565

                                   
Query: 366 ggctacaggaaatgtagtttatat 389
           ||||||||||||||||||||||||
Sbjct: 566 ggctacaggaaatgtagtttatat 589


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)