BAC Information

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BAC

Clone NameMSMg01-207M20
Chromosome4 (Build37)
Map Location 36,743,174 - 36,743,388
singlet/doubletsinglet
Overlap genenone
Upstream geneLingo2
Downstream geneLOC100042132, LOC545600, LOC621458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207M20.T7 (MSMg01no207_m20.b1)MSMg01-207M20.TJ (MSMg01no207_m20.g1)
ACCAG390902AG390903
length1,2421,227
length of high quality
(start - end)
214 (195 - 408)387 (72 - 458)
definitionCHROMAT_FILE: MSMg01no207_m20.b1 PHD_FILE: MSMg01no207_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:11 2005CHROMAT_FILE: MSMg01no207_m20.g1 PHD_FILE: MSMg01no207_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTTTCNNNNNGATCATTGGGGNTAAGACTACANAGGGAGAGGATCCGC
GGAATTCAGTTTATGAGGAAGNGCTCTTAGAAGTCCTTNCCCNCCNNCAA
AGAAGACNNCNGGACCCTTTAAAAANAATNNNNNNNATTTANTTTNTTNT
GAATTTGTATAGNTTNATTTNTTTATAANTATANTTTTTCCTGGTATTTT
ACACCCAAGTNNATTATAGGTCTTTCAGGTATTCTGTCCAAGGCCAACTC
AATTTCAGCCCCCTCCCCCCAAAAAAATAAAAATAAAAATAAAGAAAAAA
AACCCTAGTTATGTTTAGTCAACTGCTCAGGTTGTTCTCTGCAATGTATT
CCACAGGCTTGAGTTTCACAGGCTTGTTCCCCAGTTGGTGGCAATATTTT
GAGTGTATTTTTTTGTTGAAGCTGTAGTGCCTAGCTTCAGAAATCGGGAC
ATTAGGAGTTTTTTTTTTCCCACCGCACTTACCCTTGTTTCTAGAAAAAA
AAAATGGGCTGCAGCCCTTTTCAAATAGACCTTTCCCACTGTGAAGGGCT
AAAACTTCTCAAGCCTTAAATCAAAGGAAACCTCGCATCCCAAGACATGC
CTCTGCCAGTTTAATCATAGAAAGGCAAAGAAAATAGCACGCAAGCCATA
GGCTTGTTTTATTTGAGTACTGTGCCTGAAAGTGCATCAATAAAGGACTT
GCAGAAGAGTATAGTGGCTTGAAATGTCCCAATTCTGAACGAGTGGAAAG
CTACCAAAAACAAGTGATGTATAATTACTTTATGAATTTGATTAATACCT
GATAGCTTAGCTGCATGATTTTCCTTAATTTTCTTTCCCTTTTTTTTTCC
TCCTGGTATTTCAATTTAAAAGATTTGAAGGTTTACTTTTAAGGATTTAA
GTGGAAAAAAAATTTTATACAAAACCGTGTCTTAAAATTGGGTCCAGTTA
AAATGTTAATTATAAAATATACCGAATGGATTCCCTAACTTGGTTTAAAT
GGAAATTCTCTCCTTCTGGTTTGAATCTTTTGGTTTTTATAAAAATTTTT
TGCTCTTTTTTTTAAATATTTGTGGAAATGAAATCCTTTTTTAAATAATT
AGAGTATTTTTAAACCAAAAAAATATTTTTTAAAAATTTTTATATAATAC
ATTGGGATTTTTTTTTAAATAATAGGTGAATAAATAAAATTGTAATTTTT
TTATATATTGGCATCTTCNCTGATATATTAAATTTTAATTCA
TTTTTTTATGATGTGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTTCCTCATGGTCACTTGCTAGTTCCCTT
TCTCCTATGCGTGTGCCAAAATAAACCCACATATCTGCAAATTCATAACT
AGCATCAGAATAGATTATTTCTAGCTTCAGTGACCTACCTGTCAACAATA
TAATTTCATTTTTCTTTACAGGTGAATAATATTTCATTGTTTACATAAAC
CACATTTTTATTACCCACTCATTTTTGATGAATTCCTAGACTATTTGCAT
TTTCTGGGTATCAGAAAAATAGCATCAGTAAACAGGGTTGAGCAGTCATC
TCTGAAGTAGGATTTACTGACCTTTAGGGAAATGTTCAAGTGTAGTTAAA
CTGTTTAAGATAGAGGTTCTATTTCTAGCTTTGGGGGAAGTCCACACTGA
TTTTTATTTTGACCACCTGAGTTTGCACTGCCAACAACAGAAAAAAAATT
TTATAATCGTCTTTAATATAAGAAAACATAAGTTGATCAAAACCAACTCT
ATTACCATCAAGTTAAGAAACACTTGTTAAGTATTTGTTATTAATAGGCT
GGCTAAATATTTAGTAAGTTAAATGCTTGATAAGTATGTGTTATCCACAA
GTCTCTACGTAGCAAAGCAAAACATAAAAGCTCATGTCACTCGGCAATTA
AGCATAGGATGAAGTAAGAGTGTTCTGTACAAGTTTCGTAGATGACTAGC
GTGGGGTATAATTGAAATCTATTACCTCACTTCTAATTTTAACAATGCAA
ATAATCAGTAATAAGACTGAAAATTGGAAGCATATGCATACATGCCTATT
GGTACTGGAGGTGAAATATATGTTTATAAATTGATGTCTTTATAAACTGT
TAATAAACTCTCTGGAGTAAAATTTATACATTGATTACTTAACCCCCGAA
TACAATTACAAATGTTTTCTAAATATAAGTTGTTTAATTTCTTTTTGAAA
TAAAGGGACCCTTAAAAATTGGATTCCCTGAATCTCCCTGAAATATCCCC
TATTTTATTCCCACTAAGGCTTTTGAATAAGTCCCGTAAGGGTTTTCTAT
AATTTTCCTAAAAGATATGTTTATTTTTGTTCATTAAAACCTTTTTTTCT
AACAAACAAGGGTGTTCATTAATATTATTCTGTTGATAATCTCTTATAGG
TGTTGATATAATAAACTCTTCCACCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_m20.b1 MSMg01no207_m20.b1 CHROMAT_FILE:
MSMg01no207_m20.b1 PHD_FILE: MSMg01no207_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:31:11 2005
         (214 letters)



>mm_chr4_36742975_36743588
          Length = 614

 Score =  360 bits (186), Expect = e-104
 Identities = 208/216 (96%), Gaps = 3/216 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattttacacccaagtnnattat-aggtctttcaggtattctgtccaaggccaactcaat 59
           ||||||||||||||||  ||| | ||||||||||||| ||||||||||||||||||||||
Sbjct: 200 tattttacacccaagtccatt-tcaggtctttcaggttttctgtccaaggccaactcaat 258

                                                                       
Query: 60  ttcagccccctccccccaaaaaaataaaaataaaaataaagaaaaaaaa-ccctagttat 118
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 259 ttcagccccctccccccaaaaaaataaaaataaaaataaagaaaaaaaaaccctagttat 318

                                                                       
Query: 119 gtttagtcaactgctcaggttgttctctgcaatgtattccacaggcttgagtttcacagg 178
           ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 319 gtttagtcaactgctcaggttgcactctgcaatgtattccacaggcttgagtttcacagg 378

                                               
Query: 179 cttgttccccagttggtggcaatattttgagtgtat 214
           ||||||||||||||||||||||||||||||||||||
Sbjct: 379 cttgttccccagttggtggcaatattttgagtgtat 414


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 614
Length adjustment: 9
Effective length of query: 205
Effective length of database: 605
Effective search space:   124025
Effective search space used:   124025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)