BAC Information

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BAC

Clone NameMSMg01-207P14
Chromosome4 (Build37)
Map Location 4,735,139 - 4,735,526
singlet/doubletsinglet
Overlap genenone
Upstream geneRps20, Mos, Plag1, Chchd7, LOC666586, Rdhe2, 4833413O15Rik, Penk1, A830012C17Rik, LOC100039297, LOC622019, Impad1
Downstream geneLOC100039338, 1700012H17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207P14.T7 (MSMg01no207_p14.b1)MSMg01-207P14.TJ (MSMg01no207_p14.g1)
ACCAG391012AG391013
length1,1801,212
length of high quality
(start - end)
337 (119 - 455)379 (77 - 455)
definitionCHROMAT_FILE: MSMg01no207_p14.b1 PHD_FILE: MSMg01no207_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:36 2005CHROMAT_FILE: MSMg01no207_p14.g1 PHD_FILE: MSMg01no207_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCGACAGTGGGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATT
CCAAAAACCTCTAAAAGCTTAATCCCACAAGGTCACAGAAGATGTGGAAA
CAGCTACAGCATGAAGCCTGGATTGCCCCACGATAATCACTAAAATATGC
AGTGGATAAAACTGAATACTCTGAATCAAATGACTTTGCTAAAACCCACG
TAAGCCATTTCTCATGCCACAGAGAAAAAGCCCTACGTCTTCTGTGCTTG
AAAGCCAGACTGACAGCCCAAGTTGCCATTGAGACCATGGAGACCACAGA
GAACTGAGGGCTAGTGAACATTGTATTTTGTAAAATAATATGTAACTGGT
ATATAGCTGCTAGATTTTTGTTTATTTCCCAGAGTTATGACTACATTGAC
AGCTAAGACAGCAGCCAGAAAAAACTTTCACAGATGTACTCTGTTATCTC
TTTATTTATACTCTGCTTCCATTAATGCCACTGTCCAAACAAAAAAAGAG
TTCTAAAAATTTGTCTAACTCTAATAAACATTTCACTACATGGTCAAACT
TTTTAAACTTGTTACTTCTGTTCCACAAGGGACTCATCTTAAGACTGTTC
ATGTTTTTAACTCGTGATATCTCTTTTATAAATTTTAAGATACAGGAAAC
CCACTCAGCTACCTCTCATGGACCAAATAGCCTTTTTCCAGATAAGTACA
TCTGCCCAAAGTTTCCACTTGTTACCTTTTCCAAAGGGTGGGATTACTCT
GGGTTAAGAAAAACTTTTTCTTTCTCCCAAACATACTTAATATTATTCTC
TACCTATAATAATGTCTGTCAACATCTTGCCAAGTCCAGGCACCAACTAT
CCCTAGGACAGGTCCAGAGAAGCAACCTTCAGATGCTCCATCTCCTCTCA
CACGAAGCTTTCTACTGAAATTGTTCTTCTGACTATCCTCAGAAGGCTTC
ACAAAACCTGGATAACAGGAAACATCCAATTTCCCTAAAATGAAAAAAAA
TTTTCAAACCCATTTCTCCTGGGTTTCCAAAAAACACGTTGTCCCATATC
TATATTTGTATATCCCAAAATTTTGTAAACCCTATTTCTCGTTTTTCCCA
CAAAACCTTCAAAAATTTTTCTTTTTTAAAAATATTTTAAACATTTTTTT
TTATTTATGTCTTTTCAAAGTGTGGTATTG
NNNGGGAGATGCGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTCTTTAAGTGATATTCCACCTGGCATTGTCAGC
AGAGGGGACTTTTAAAAGCCCAGGTTCCCCTGTCATCTATAGCTTAATTC
TTTTCTTTTGAGGAATGTCCTTAGGATTGACTTGGAAAAGAAAATGCCCC
TAGGGCTCTCATTCCATTCTTTGTTTTCATGGTTGTAGAGGTAAGCACAG
GGATAAAGCTGCAACCTGGACACACTCTTTCCCATACAGCAAGGGCAGAA
AGCAAGCACTCCTGCAATTTCTTGTCTTGAACATGGCAACAGCCTTCAAC
TGAGACCTGGGTGTTTTCAACAAGTTTTCTGGAAAAATCACTGCAGTCAT
TCTTTGACTCTTGAGCATATTATGAGCAGTAGACATTTCTTTGTGGAAAT
TATGTTTTTAGTCACTAAAGGCAGTGTCCCTAAAATATAAAATCTTTGGT
ACTTAGGAAGATAAGTCCCCTACAATCTGGATGTGGCTCTCCTGTACATG
CGAGAAGCCATCTAGGAGAAGCTAATAAACTAGCAGGTAATAATCGTCCT
GAAATGGTGCTGCCATGAACTGTAAAGTTATGATGAATTTGCTTCTTCAG
GCATGGNCAAGAAGATAACATTTTTAGGAAAGATTTCTACTATTAATATG
CTTTTTCTGTATATATATATAAACAATCAGCCCGTACCATCTGGTAGTGA
TGTTATATAGACAAATAGATTATTTCTTAATTCTTAATGATAATACTGTA
AGATATGTAATAGATAAGATATATAATTAGCAAAACTATATTAGCAATTA
TTAAGATTTTTTTATAATATGACTGCTATTGAGCCCCTTTCTGATGTTCA
AACTGCAAGGAGAACTCTGCCCATCTTTAAGTGTCATGAGTTAATTGTTT
CTGAAAAAGAAATAAGGGTTTCTTAAACTTTAAAGCCCTTCCCTAGAAAA
TTGTGTAAATTAATTATTCTCAGGTTCCTAATAGGGGGAATATATTGGAT
TTTTTTCCGGGCTCCTCGGCTTAAAATTTTTATTTTATTTTTATGTGTTT
TTTATATACATTATTTTCCTTGAATTTTCTTTTTATTTGTGTTTTTTATA
TTCCCTCCTAAACCTTCTTTGTCTATTTTTATTTAGTGCTATTTATTGGT
TCTTATCTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_p14.g1 MSMg01no207_p14.g1 CHROMAT_FILE:
MSMg01no207_p14.g1 PHD_FILE: MSMg01no207_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:31:36 2005
         (379 letters)



>mm_chr4_4734800_4735577
          Length = 778

 Score =  598 bits (309), Expect = e-175
 Identities = 364/389 (93%), Gaps = 12/389 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatattccacctggcattgtcagcagaggggacttttaaaagcccaggttcccctgtcat 60
           |||||||||||||||||||||||||||||||| | || ||||||||||||   |||||||
Sbjct: 727 gatattccacctggcattgtcagcagaggggagtcttcaaagcccaggtttttctgtcat 668

                                                                       
Query: 61  ctatagcttaattcttttcttttgaggaatgtccttaggattgacttggaaaagaaaatg 120
           |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 667 ctatagcttaattcttttcttttgaggaatgttcttaggattgacatggaaaagaaaatg 608

                                                                       
Query: 121 cccctagggctctcattcc-----------attctttgttttcatggttgtagaggtaag 169
           |||||| ||||||||||||           ||||||||||||||||||||||||||||||
Sbjct: 607 cccctatggctctcattccattccagctttattctttgttttcatggttgtagaggtaag 548

                                                                       
Query: 170 cacagggataaagctgcaacctggacacactctttcccatacagcaagggcagaaagcaa 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 cacagggataaagctgcaacctggacacactctttcccatacagcaagggcagaaagcaa 488

                                                                       
Query: 230 gcactcctgcaatttcttgtcttgaacatggcaacagccttcaactgagacctgggtgtt 289
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gcactcctgcaattccttgtcttgaacatggcaacagccttcaactgagacctgggtgtt 428

                                                                       
Query: 290 ttcaacaagttttctggaaaaatcactgcagtcattctttgactcttgagcatattatga 349
           ||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 427 ttcaacaagctttctggaaaa-tcactgcagtcatcctttgactcttgagcatattatga 369

                                        
Query: 350 gcagtagacatttctttgtggaaattatg 378
           ||||||||||||| |||||||||||||||
Sbjct: 368 gcagtagacatttttttgtggaaattatg 340


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 778
Length adjustment: 9
Effective length of query: 370
Effective length of database: 769
Effective search space:   284530
Effective search space used:   284530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)