BAC Information

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BAC

Clone NameMSMg01-208L04
Chromosome4 (Build37)
Map Location 97,848,868 - 97,849,152
singlet/doubletsinglet
Overlap geneLOC669426
Upstream geneLOC620883, EG638698, Nfia, LOC100039459
Downstream geneLOC384106, 0610025J13Rik, Tm2d1, Inadl, L1td1, Ankrd38, LOC100039541, Usp1, Dock7, Angptl3, LOC665193
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-208L04.T7 (MSMg01no208_l04.b1)MSMg01-208L04.TJ (MSMg01no208_l04.g1)
ACCAG391494AG391495
length935718
length of high quality
(start - end)
---287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no208_l04.b1 PHD_FILE: MSMg01no208_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:36 2005CHROMAT_FILE: MSMg01no208_l04.g1 PHD_FILE: MSMg01no208_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAAAGAATTGATGGCANCTACAGCNNNNNNNNNNNNNNNNCNNNANGGG
CGGCGGGGNNNAGAGAGGTTCCCAGAAAGGGGGCGCCCGCGCGAGGGGGA
GAGGCGCGCGGCAGCGCCCGGGGNNGTAACCACGAGCGAGCAAGACNGGG
GNNGNNNGNGNGGNNGCGGCGGCNAGANCGAAGCGAGGGAGACGGGACGA
CGCCGCGCGCAGCGGGGCGGGAGACACACNANACGCGCACCACAAAACCA
NAAATGTAAATCCGCACGTAGCCACAACCTATGTTTGTTAGTACGCCCGC
GCCGTGTTAGGGTTGTTGCGGCGCGGCCTTATAATCGCGGCGGAGGAGGG
CGCGGGGTAGGGATGTGTATTGGGTGTGAGTGGGCGGGGAGGGGGGGCGC
AGGAGAAGAAATATTTTTTTTTTTTGCCACCCCCCCGCCCGCGCGGANGA
GGATGAAAGGTNAGATGTGATGTTGATATAGAAATATAATAATAAAAAAA
AAAAGAAAATAAAATATGGAGAGGGGGGGGGGCGGGAGGACCCAAAGGGC
TAAGGACGCGGTGTGAGGAGGAAGAGGGAAGAGAGACAGGGGAAGAAAAA
AGGCAGTAAGGAGTCAGAAGATAGAGAGTAGAAAGGAGAAGGGAAAAATA
ACCACGAATTGAGAGAGGGGAAATGTGAGGGAGTGGGGAGAAACACTGAG
AGTGAGCGGTGTACAAGCAGTAGAAGTAGACAGCGAATGAACAGCCACAA
TAGAGTGAATGAACGGAGAGTGCTGACGAGCTAGGTGTGAATTAGAAGTC
TTGTGTGGGTGACTAGTGTTATCGGCAGACACACGTCACGTAGAGGTTGT
TGGTTGGAGGGTAGCAGAGCGCGGTGAGAGAGGGTGCGGGGAGGCGGTGT
CGTGGAAGCGAGAGGACGATACAGGATAGGAAGCN
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCGGGGGATTCTGATCTTGGCAGG
AGCTCAGCAAGCTGATACCAGCCTCCACGTTGTGCTCTAGCATTGGGGGA
AATGTGTGCAACGCTTCTCTCCAGGCTTAGAGAGACAACTCCTCTCTGCA
AAGTTTCTGGATTCTGGCGTAATGCAAGGGAGCGAGGCACAAAGGCTTCT
CTGTTGCCACACAGAAGTGGCATGAAATAAAGGACCTGTGGCCAGGACAT
CTCCATGCCGGGGTCTATACTCAAGAAGACGGACATTGTTTTGGTTTCCT
TGCTAGACTGATTATTCAGACAACAACAGGAAGTGCATGGTCTATACTAA
TATGCTATTTTCCCACCCCCCCCAAAGTGAGGAATATAATTTGTTCTTCA
TTCTCTCATTCAGTCAATTAGCAAACATTTGTCGTGTACACACAAATCTC
AGGCATAATGTTAACTAAGAAAAAAAATTTATACATTTAAGAACCTGTTC
AGTACAAACTTAGACGTAACATAAAAGATGCTCCGGGAGACTAAAGACAA
ACTGAACACTGGGAGAAAAGAGATGGTGGTTTGAAGATTGCTTAACAAAA
GTCCGAATGTTCAGGCTGAACCTTGTGATGTGGCTGCGCATTTCTACAAG
TTAAAAGGTGCTATTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no208_l04.g1 MSMg01no208_l04.g1 CHROMAT_FILE:
MSMg01no208_l04.g1 PHD_FILE: MSMg01no208_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:36 2005
         (287 letters)



>mm_chr4_97848668_97849354
          Length = 687

 Score =  520 bits (269), Expect = e-152
 Identities = 281/285 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccgggggattctgatcttggcaggagctcagcaagctgataccagcctccacgttgtgct 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 ccgggggattctgatcttggcaggagctcagcaagctgataccagcatccacgttgtgct 260

                                                                       
Query: 61  ctagcattgggggaaatgtgtgcaacgcttctctccaggcttagagagacaactcctctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctagcattgggggaaatgtgtgcaacgcttctctccaggcttagagagacaactcctctc 320

                                                                       
Query: 121 tgcaaagtttctggattctggcgtaatgcaagggagcgaggcacaaaggcttctctgttg 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcaaagtttctggattctggggtaatgcaagggagcgaggcacaaaggcttctctgttg 380

                                                                       
Query: 181 ccacacagaagtggcatgaaataaaggacctgtggccaggacatctccatgccggggtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccacacagaagtggcatgaaataaaggacctgtggccaggacatctccatgccggggtct 440

                                                        
Query: 241 atactcaagaagacggacattgttttggtttccttgctagactga 285
           |||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 441 atactcaagaagacgggcattgttttggtttgcttgctagactga 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)