BAC Information

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BAC

Clone NameMSMg01-209D11
Chromosome4 (Build37)
Map Location 155,462,441 - 155,462,688
singlet/doubletsinglet
Overlap genenone
Upstream geneMorn1, Ski, 2610002J02Rik, Prkcz, Gabrd, 2010015L04Rik, Tmem52, Gnb1, Nadk, A530082C11Rik, Cdc2l1, Mmp23, Mib2, B930041F14Rik, Ssu72, EG381582, Atad3a, Vwa1, A230069A22Rik, E230028L10Rik, Mrpl20, Ccnl2, Aurkaip1, Mxra8, Dvl1, Tas1r3, BC002216, Cpsf3l, Pusl1, Centb5, Ube2j2, C1qdc2, B3galt6, Sdf4, LOC100043436, Tnfrsf4, Tnfrsf18, Ttll10
Downstream gene9430015G10Rik, EG667357, Agrn, LOC100038882, AW011738, LOC677185, 2310042D19Rik, Plekhn1, Klhl17, LOC100042378
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209D11.T7 (MSMg01no209_d11.b1)MSMg01-209D11.TJ (MSMg01no209_d11.g1)
ACCAG391826AG391827
length720708
length of high quality
(start - end)
248 (71 - 318)274 (77 - 350)
definitionCHROMAT_FILE: MSMg01no209_d11.b1 PHD_FILE: MSMg01no209_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:17 2005CHROMAT_FILE: MSMg01no209_d11.g1 PHD_FILE: MSMg01no209_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGG
AATTCACTAACTTTCGTGACAATTTATGTGTGCTATGGGGCTTAGCTGGT
AAACTTTACCACGTCAGTATGCCTTTCTTCTATCCCTGGTTTACTTAAGT
TAGCTTTCTGTCCTCCTCCACCTCCTCCTTTTCTGGACAGGATCTCATGT
AGCACATTTTGACACTGAACTCCTTGTTAATCCTCTCCCCATCTTCAGAT
TGCTGAGATCATAGTCTGTTATTATGTCTGGTTTCTGTGATGCTGGGGAT
AAAATCCAGGGCTTCATGTGTACTAGGTAGCACTCTACCTGTTGATTTCA
CACCCTAATCTGGTTCACAACTATTCAAAACTTTTTTTTTAAGTTTTTCT
TTATTTTTAATTGTGTCCGCCCTGATATGTACGTATGCATGCTGGTGCCC
TCAAGAGTATGTGCATGCGAATGCTGGGACTGCCAGAAGCCATAGGAATT
GGATGCCCCATGAGGTGAAGTCATAGGCAGTTGTGAGTTGCTCAGTGTAC
GTGCTAGTAATCCAAAATTGATCCTCTACAAAAAAGCAGTACATACGTTT
AACCACGGAGCCATTTCTCTAGTCCCTAGTTAAAGCCCTTTCTGTATCAG
CTGAGGTAATCACATTTTCTCCACTAAGTCACTGATACATTCCTTTACTC
TTAGCACACATATCCCCTGT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCAGTGAAATTGCTAACCTCACTC
CACCCCCAGGGTATTTCCCCTTTTTAGATGCAAAAATGCTGCCAGGGAAG
TGAGCTTCCGGGAGCCTAGGTACTCCTGCAAATGAAGAACGGTCGTCACA
CACACACACAGACACACACAGACACACACACACACACACACACACACACA
CACACACCTCGGGTGAAATAACAAAGCAATGAGTAGCTACCAGGAGGGCA
GTATTTTTAAAAGGAAAACATATTTCTAAGAAGAAAAGCAATGAGCTGGT
AGTGTGTTGTCCCTTTATCCAAGACCCGGGAGCAGAGGCAGGCGGATTTC
TGAGTCGAGCCCAAAAAGAAAAAAGAGTGAGTTCCAGGACAGCCAGGGCT
ACACAGAGAAACCCTGTCTCGAAAAACAAACAAACAAACAAACAAAAGTA
ATGGATTTATCTTCTAGAGGTAACTGCAGTGGTCTGAGGACAAACCATAG
ACAAAGTGTAGAGGCATGGAGCCGCCCTCCCCACTCTGAACTGGGACAAC
GTCAGGGTCAGCCTTCGGCTTCAGAAGGCTCTTGCAGAAACAGTTCCCTC
CCTTTCAGGGCCAAAATGTCTCCCAGTACACTTGTTCTGCTGTGCTGTAA
CAATAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_d11.b1 MSMg01no209_d11.b1 CHROMAT_FILE:
MSMg01no209_d11.b1 PHD_FILE: MSMg01no209_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:17 2005
         (248 letters)



>mm_chr4_155462241_155462888
          Length = 648

 Score =  464 bits (240), Expect = e-135
 Identities = 246/248 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatttatgtgtgctatggggcttagctggtaaactttaccacgtcagtatgcctttcttc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 aatttatgtgtgctatggggcttagctggtaaactttaccacgtcagtatgcttttcttc 260

                                                                       
Query: 61  tatccctggtttacttaagttagctttctgtcctcctccacctcctccttttctggacag 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatccctggtttacttaagttagatttctgtcctcctccacctcctccttttctggacag 320

                                                                       
Query: 121 gatctcatgtagcacattttgacactgaactccttgttaatcctctccccatcttcagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatctcatgtagcacattttgacactgaactccttgttaatcctctccccatcttcagat 380

                                                                       
Query: 181 tgctgagatcatagtctgttattatgtctggtttctgtgatgctggggataaaatccagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgctgagatcatagtctgttattatgtctggtttctgtgatgctggggataaaatccagg 440

                   
Query: 241 gcttcatg 248
           ||||||||
Sbjct: 441 gcttcatg 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)