BAC Information

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BAC

Clone NameMSMg01-210F07
Chromosome4 (Build37)
Map Location 15,083,542 - 15,083,822
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625831, LOC433687, LOC100040030, LOC433688, Slc26a7, 1700034K16Rik, Otud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1
Downstream geneTmem64, LOC100040095, LOC633695, Calb1, Decr1, Nbn, Osgin2, Ripk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-210F07.T7 (MSMg01no210_f07.b1)MSMg01-210F07.TJ (MSMg01no210_f07.g1)
ACCAG392491AG392492
length801726
length of high quality
(start - end)
227 (45 - 271)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no210_f07.b1 PHD_FILE: MSMg01no210_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:49 2005CHROMAT_FILE: MSMg01no210_f07.g1 PHD_FILE: MSMg01no210_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGATCTTTCCAAGACTTTTAACGTGAAGGGATGCTGAATTCTGTC
AAATGCTTTTTAGGCATCTAATGAGATGATCACGTGTGTTTTTTTCTTTG
AGTTTATTTATGTAGTGGACTACGTTGATGGATTTCCATATATTGAACTA
TCCCTGCATTCTTGGNATGAAGCCTACTTGGTTGTGGTGAATGATCATTT
TAATGTGTTCTTGGATTCNGTTGNCAAAAATATTATTGATTATTTTTGCA
TCAATGTTCATAATGAATATTGGTCTGAAGGTCGCGGTGGCTTCTTTTCN
CNTTGTTTTTTTTTTTTTCCCCCCCCCCCCCCGCNTTTAATATAATTTTT
TTATTATTTTTTTTTTGTCCCCCCACAAAAAAAAAAAAAAATTTTGTCCT
ACCCCTCTTTTCCCTTACTCTCCTTCCCCTTTTTCCTATTCTTTCATTAT
ATTTCCCTTTCTCTTTCTTTTTTTTACTCCTCTCTCTTACCCTCTTATTA
TTCTACCTTTATTTCCTACTTTTCCTCCCATTCTTTTTTTTCCATTCCCT
TTTTCCTCTTTTCTATTATAATACCTTTCTCTTTTCCTTTCCCTCCCATC
ACCTATCTCTCATAACCTTTTCCTCTCTCCCATTTACCTCTTATATTTTC
CCTTCCATTTTCCCTTCATTTCCCTTTTTTACCCTTCTTTTATTTCTCTT
TTTTTTTTCACCCTACCTACTCATATCCCCCTTGTGGCGGTGGGTGGCGG
G
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGAACAATGAAAGAGCCTGTCTC
AAGCAAGAACATAGCCGAAAGTGAATAAGGAAGACTTCTAAAGTCAAACT
CTGGTCTTTACACACACTTCCAGAGACATGTACATACCCCTACACGAACA
TTTGCAAGTACACAAAATGAATAAATATAATTAAAAGTATTCATACATAC
ATATAACATAATTTGGGCATTTTTAATTGGTCATTTAGCTTTTTACTGTT
TAAACTCTGAATACTAAATTCTGTTTAAATTTCTCCTTCTGAAGTGAGAC
ATAGCTTAAACCTCTAGGAAAAAAATGCTCCAAAAATAAGTTCTCTTCAA
ATATACATTAAGTGTACGCTTGCTTCCAGGCAACTAACAGCCATGGATGA
AGAATGGCCAAAGCTTGTTCTTGGCAAAAAAAAAAAAAAAAAAAGAATCC
ACATGTTAGAGAGGCACTCTTTCAATAGACAATGGTACTGCAGTAATATG
GAGTGCTCCTGGAGGATTGTGGTAAGGNNTGGAGAGAAGACCATGAAAAA
CTCTTCTCTGCTTCACAGCCTGTTCTCTGTAAGTAGCAAAAGAAGAACTC
AGGAACTATAAGTACCAAGGGGTTTTAAAAGCACTAACTAATAATGACTA
TTTTGCTATACACCAACTTATCCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no210_f07.g1 MSMg01no210_f07.g1 CHROMAT_FILE:
MSMg01no210_f07.g1 PHD_FILE: MSMg01no210_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:49 2005
         (287 letters)



>mm_chr4_15083338_15084023
          Length = 686

 Score =  491 bits (254), Expect = e-143
 Identities = 275/282 (97%), Gaps = 1/282 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   acaatgaaagagcctgtctcaagcaagaacatagccgaaagtgaataaggaagacttcta 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 acaatgaaagagcctgtcccaagcaagaacatagccgaaagtgaataaggaagacttcta 264

                                                                       
Query: 65  aagtcaaactctggtctttacacacacttccagagacatgtacatacccctacacgaaca 124
           ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 265 aagtcaaactctggtctttacgcacacttccagagacatgtacatgcccctacacgaaca 324

                                                                       
Query: 125 tttgcaagtacacaaaatgaataaatataattaaaagtattcatacatacatataacata 184
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 325 tttgcaagtacacaaaatgaataaatataattaatagtattcatacatacatataacata 384

                                                                       
Query: 185 atttgggcatttttaattggtcatttagctttttactgtttaaactctgaatactaaatt 244
           ||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 385 atttgtgcatttt-aattggtcacttagctttttactgtttaaactctgaatactaaatt 443

                                                     
Query: 245 ctgtttaaatttctccttctgaagtgagacatagcttaaacc 286
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgtttaaatttctccttctgaagtgagacatagcttaaacc 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 686
Length adjustment: 9
Effective length of query: 278
Effective length of database: 677
Effective search space:   188206
Effective search space used:   188206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)