BAC Information

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BAC

Clone NameMSMg01-210J01
Chromosome4 (Build37)
Map Location 110,425,282 - 110,425,571
singlet/doubletsinglet
Overlap genenone
Upstream geneFaf1, Dmrta2, Elavl4
Downstream geneLOC100040381, 2310026E23Rik, Spata6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-210J01.T7 (MSMg01no210_j01.b1)MSMg01-210J01.TJ (MSMg01no210_j01.g1)
ACCAG392635AG392636
length702719
length of high quality
(start - end)
---301 (77 - 377)
definitionCHROMAT_FILE: MSMg01no210_j01.b1 PHD_FILE: MSMg01no210_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:09 2005CHROMAT_FILE: MSMg01no210_j01.g1 PHD_FILE: MSMg01no210_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCTAAAATCCGAACCGCCNCGGAAGTCAACACCATTACACTAGCGAAT
ACCNACANAAATAACCATGATTAAACATCGAGTAATACCTGTTTCTTCTA
AAAAACTCCCGTAACGGAAGCACAGAAGCATACACAGACCGCTAGCAATA
CCGACGCAGATACAGCGCAAGTGGCCCGCGGAATCACATAGACCACXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCGAACACCACAGGT
ATCGCATAATGCCGATGTCGAAAACACGATCCTTTTTTTTTTTCTTGTTG
ACATTGCACTAACACCTGCTGACCCCCCCATGCCCTATACCTTCCTTTGC
CG
TCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATATCACAGAGTAAAACGTCTTAA
AATAAATGTTTGGTACCTGTACCTGTTTGTTAATTCCAGCTTCAAGGATC
CATCAATCTCTCTGGTCTCCTCAGGCACACTCACACACACACACACACAC
ACACACACACACACACACACACACACACACACACACACCACAAGCATGCA
TAGATATTACATATATATGTACATATACTCCCAGGCACACAAACAGAATA
TATCCCCCTCCCTCCTGGTTTAGCTGATGTGTTGAATTTATCCTTTGCAA
CCATACCCAAATAAACTATTTATGACATATACAACATCTGATCTATGAAT
CTCAGAACTATTAAGTGCCATTTCCAACTGCTAAGTTTGCTTACATGGTG
ATGGAAAAATACAAAGGCAAATACAAATGGCTTTGCAATTGTGTCTACTC
TTGTGACATTTGGGGGTCGGCTTTATCGTAGAACAAATGTAGAATCAGGA
AATTTACTGCTGTTTCACTAAATTACTTATATTTTCTTAACTTCCTCTGG
AAAGGATTGAGGCAAATATTCCTACTTTATTGTGGGATAAAATTTAGATG
ACTCCTCTGAATTTTTCTTCTTGAAATAATTATTACACACTGACTTGTAG
ACACTCACTTCTCATTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no210_j01.g1 MSMg01no210_j01.g1 CHROMAT_FILE:
MSMg01no210_j01.g1 PHD_FILE: MSMg01no210_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:35:09 2005
         (301 letters)



>mm_chr4_110425071_110425771
          Length = 701

 Score =  511 bits (264), Expect = e-149
 Identities = 287/302 (95%), Gaps = 13/302 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatcacagagtaaaacgtcttaaaataaatgtttggtacc-tgtacctgtttgttaatt 59
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 212 atatcacagagtaaaacgtcttaaaataaatgtttggtaccttgtacctgtttgttaatt 271

                                                                       
Query: 60  ccagcttcaaggatccatcaatctctctggtctcctcaggcacactcacacacacacaca 119
           ||||||||| ||||||||||||||||||||||||||||||||||||            ||
Sbjct: 272 ccagcttcacggatccatcaatctctctggtctcctcaggcacact------------ca 319

                                                                       
Query: 120 cacacacacacacacacacacacacacacacacacacacacaccacaagcatgcatagat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cacacacacacacacacacacacacacacacacacacacacaccacaagcatgcatagat 379

                                                                       
Query: 180 attacatatatatgtacatatactcccaggcacacaaacagaatatatccccctccctcc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 attacatatatatgtacatatactcccaggcacacaaacagaatatatccccctccctcc 439

                                                                       
Query: 240 tggtttagctgatgtgttgaatttatcctttgcaaccatacccaaataaactatttatga 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 440 tggtttagctgatgtgttgaatttatcctttgcaaccatacccaaataaactagttatga 499

             
Query: 300 ca 301
           ||
Sbjct: 500 ca 501


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)