BAC Information

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BAC

Clone NameMSMg01-210J05
Chromosome4 (Build37)
Map Location 51,003,130 - 51,003,420
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666663, LOC100040979
Downstream geneLOC666681, LOC100040814, LOC384015
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-210J05.T7 (MSMg01no210_j05.b1)MSMg01-210J05.TJ (MSMg01no210_j05.g1)
ACCAG392640AG392641
length732741
length of high quality
(start - end)
320 (47 - 366)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no210_j05.b1 PHD_FILE: MSMg01no210_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:10 2005CHROMAT_FILE: MSMg01no210_j05.g1 PHD_FILE: MSMg01no210_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCACACATTAATATTNGGGAAGTTTCAACACCCAACTATCACCAA
TAGACTTGTAATCAAAACAGAAACTAAAGAGAAAAGTAATGAAACTAACA
GATGTTATGAATCAAATGGATCTAACAGATATTTATAGAATATTTCACCT
GAATAAAAATAATATACCTTCTTCACAGCACCTATGAGAATATATATTCA
GTCATTGAGAAAATCTAAACATACACAAGAATATTTATATAAGCTTCTAT
ATCTTATAGATTACTATGGATTTAAGCATAATATCAACCACAAAAGTAGA
CACACAAAGCCAATATATATATGCACCCCTCGCCCACCTCTCTACTGAAT
GACCACTGGGAAATATATTAAAGCACACAAATTAAAGACTTTCTAGAATT
CACTGAAAATGAATACACAATATGCCCAAACATATCGGGTACATGAAAGC
AGTGAGTTCATAGCACTAATAGCCTTTGCAGAGAAATCTCATACATGCAA
CTTAACAGCACACCTGAATGATCTAGAAAAAATAAGCAAGCACACCATAT
ATGAGTTGACTATGGAAAATGATCAAATTCATAGCTGAAATCAATAAAAT
AGGAACAAAAAACAACACTAAGAATCAATGATACAAAGAGTTAGTTCTTT
GGAAATCATCAAGATTTTCACTTAGGCTAACN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGATGCTAGACACAGGGTTAGCTA
AGCTGTATGTTTAGAATCTGTGTGTTTTGTTTTATGCAACTTATAGTTCA
ACTCGTTGAATAAAAAGAAAAATCAAGTGGACATATAGTCAAATGCACCA
ATTTGTTGAGAAATCACAATTAAAAAAAAATAAAGTCATTTTTCAACAAG
ATTGCAAGAATCAAAGATTACAAAATAAGTTTCAAAATTAAATGTTAAAT
ACATTTTAAAAAGGAATTAAAACTATAGGTAACTTTGTCACTATTTTTGA
TATTATGGAAATTTGTGTTCTCTACCCACCCACACCATTTAAGGGATTTA
GTCAATATTTGTGTGTTATGCACACTTTCAAATAATACAACATGGAGTTA
ATAGAAACAGTTCATTATTCTGAAAGACAATTATCTCAACACAAACTGTA
GCTATAGCTTCATATAAACTATCTTCTAAAATAATTTTGACACCTCTGCC
TTCAAATAAAACTAATTTGAATAAATGAATGCAAATTTACCATCACATAG
ATATGGAAATAATATTTTTACTATATAGCATAAGATATAATGAAAGAAAG
CAAGAAATATATTAACTGGCATAAATCCTTGCCACACTGCAAATATAACC
CTTCAGATATTCATAGACAATTTTTAACATTTAAAAGGTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no210_j05.g1 MSMg01no210_j05.g1 CHROMAT_FILE:
MSMg01no210_j05.g1 PHD_FILE: MSMg01no210_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:35:10 2005
         (292 letters)



>mm_chr4_51002930_51003621
          Length = 692

 Score =  532 bits (275), Expect = e-155
 Identities = 287/291 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatgctagacacagggttagctaagctgtatgtttagaatctgtgtgttttgttttatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatgctagacacagggttagctaagctgtatgtttagaatctgtgtgttttgttttatg 260

                                                                       
Query: 61  caacttatagttcaactcgttgaataaaaagaaaaatcaagtggacatatagtcaaatgc 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caacttacagttcaactcgttgaataaaaagaaaaatcaagtggacatatagtcaaatgc 320

                                                                       
Query: 121 accaatttgttgagaaatcacaattaaaaaaaaataaagtcatttttcaacaagattgca 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 accaatttgttgagaaatcacaatttaaaaaaaataaagtcatttttcaacaagattgca 380

                                                                       
Query: 181 agaatcaaagattacaaaataagtttcaaaattaaatgttaaatacattttaaaaaggaa 240
           ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 agaatcaaaaattacaaaataagttccaaaattaaatgttaaatacattttaaaaaggaa 440

                                                              
Query: 241 ttaaaactataggtaactttgtcactatttttgatattatggaaatttgtg 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaaaactataggtaactttgtcactatttttgatattatggaaatttgtg 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)