Query= MSMg01no210_p05.b1 MSMg01no210_p05.b1 CHROMAT_FILE:
MSMg01no210_p05.b1 PHD_FILE: MSMg01no210_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:35:41 2005
(313 letters)
>mm_chr4_38343911_38344622
Length = 712
Score = 513 bits (265), Expect = e-150
Identities = 298/309 (96%), Gaps = 3/309 (0%)
Strand = Plus / Minus
Query: 5 gaattctgtatg-tttctttttcctttaaaagcattgcactacaagtccagtgctaatgc 63
|||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 511 gaattctgtatgttttttttttcctttaaaagcattgcaatacaagtccagtgctaatgc 452
Query: 64 ttattgggaagtaagtaatgaattatttcaaatgcttaggtctttggatacaataaattt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ttattgggaagtaagtaatgaattatttcaaatgcttaggtctttggatacaataaattt 392
Query: 124 gtgtaaatttaaagagtagactgaatatgtatatataaaaaaagacataaaaatgatggt 183
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 391 gtg-aaatttaaagagtagactgaatatgtatatat-aaaaaagacataaaaatgatggt 334
Query: 184 agtttaccagatacaaagagaaaacctgttaagtttcgttatttttgtgttgttgctgct 243
||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||
Sbjct: 333 agtttaccagatacaaagagaaaactttttaagttttgttatttttgtgttgttgctgct 274
Query: 244 attttaacattagcaaggctctataatttcattatgttgtccattgaacttagttagctc 303
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 273 gttttaacattagcaaggttctatattttcattatgttgtccattgaacttagttagctc 214
Query: 304 aaagtcttc 312
|||||||||
Sbjct: 213 aaagtcttc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 712
Length adjustment: 9
Effective length of query: 304
Effective length of database: 703
Effective search space: 213712
Effective search space used: 213712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no210_p05.g1 MSMg01no210_p05.g1 CHROMAT_FILE:
MSMg01no210_p05.g1 PHD_FILE: MSMg01no210_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:35:41 2005
(273 letters)
>mm_chr4_38169387_38170061
Length = 675
Score = 422 bits (218), Expect = e-122
Identities = 260/274 (94%), Gaps = 4/274 (1%)
Strand = Plus / Plus
Query: 1 aggtatccacagagttgaacagaaggcaacgtgttccctagaactgggaatacaggtggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtatccacagagttgaacagaaggcaacgtgttccctagaactgggaatacaggtggt 260
Query: 61 catgagctccttgtaaagttgctggatttgtatatgggtagtgtggaaaaa-cagtat-c 118
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| || |
Sbjct: 261 catgagctccttgtaaatttgctggatttgtatatgggtagtgtggaaaaaacag-attc 319
Query: 119 tgttcccagctgtagaactatctttactgcccagtagcataatacattt-aaaataaaaa 177
|||||||| |||||||||||||||||||||||||||||| ||| ||||| ||||||||||
Sbjct: 320 tgttcccaactgtagaactatctttactgcccagtagcagaatgcattttaaaataaaaa 379
Query: 178 gttaaaagtacactttattagaaatagatgttctttgtcatagtgtaaatactaaagaga 237
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gttaaaagtatacttcattagaaatagatgttctttgtcatagtgtaaatactaaagaga 439
Query: 238 gatctggaggttctgggggtgaggagtaactgga 271
|||||||||| ||||||||||||| |||||||
Sbjct: 440 gatctggagggggtgggggtgaggaggaactgga 473
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 675
Length adjustment: 9
Effective length of query: 264
Effective length of database: 666
Effective search space: 175824
Effective search space used: 175824
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
