BAC Information

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BAC

Clone NameMSMg01-211J10
Chromosome4 (Build37)
Map Location 61,851,885 - 61,852,069
singlet/doubletsinglet
Overlap geneZfp37
Upstream geneLOC100039089, LOC667239, LOC100039116, LOC667242, LOC100039150, LOC100039019, LOC100039177, LOC621093, LOC100039206, LOC621127, LOC100039228, LOC384021, LOC100039247, LOC667278, Mup5, LOC435785, LOC667295, LOC100039305, LOC546832, OTTMUSG00000007485, Mup3, LOC100039345, OTTMUSG00000000231
Downstream geneSlc31a2, Fkbp15, Slc31a1, Cdc26, Prpf4, Rnf183, Wdr31, Bspry, Hdhd3, Alad, Pole3, 4933430I17Rik, Rgs3, Zfp618, Ambp, Kif12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211J10.T7 (MSMg01no211_j10.b1)MSMg01-211J10.TJ (MSMg01no211_j10.g1)
ACCAG393250AG393251
length811846
length of high quality
(start - end)
187 (93 - 279)---
definitionCHROMAT_FILE: MSMg01no211_j10.b1 PHD_FILE: MSMg01no211_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:52 2005CHROMAT_FILE: MSMg01no211_j10.g1 PHD_FILE: MSMg01no211_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCCCTTTTTTCTTTTTTTCCTCCTCAATCTCCTCTCCCTAACATTTA
TTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
CAGATCTCTGTACTTGCTTAACAAGCACTTTACTGATTATGATATCTCCT
TATTCACTCTTTTAAAAGATTCGTATTTTAATCTAAATATGGAGACAATT
TATAATAAGTGTAAAAATACAGTATTTTCTGTTTAGGTTTGGGATCAAGG
TTAAATTTTATTACCATCTTATGTAAAGATCCATATTCAAATTCTCTCAT
GTATCATCAGTAATGATTTCCTTAAAAAAGATATTCTAACATCATCAAAT
TGAGAACATCTTTAAGGTTTATTAACACCCAATCAGCCAGTTGTCAGATT
TCCTATATTAAATANTTTCCCTCCATCGCCCCCTCTGAGTGAATTTTCAT
ATGTTTGTTAATAGAGGCTTTTTTAAAAAAAAGATACACCACCTTGTCAC
ATTCATAGGGCCATCTCTCCAGCGTGTGATCCCTGACGATATAATATGCC
CCGATTTTGTTTCGTAAGCCCTCCTCCCTTCTTCCCATTCTTTGGGCCCC
CCCCTTTTTACGACTTTTTTGCCCTTTTTTTTCCCCCTCCCCCTTTTTAT
TAAGTTTTTTCCACCTTTTCCACCACTTTTTACAGCCTTCACCTTCCTTT
TTTTTTGCCCTTTTTTTGACCCTCGCATCCACCGTTTTCCATCCCCTTTT
TCACCTCGTTTTTTTTTTCCCCTTGATTAAACTTTCACAACCTTTCGCCT
TTATCCCTATA
AGAGGAGAGGAGAAATAAAAANNCGGGNANTTTCTTTCATCTCCTTTCAA
GAAAGAAGAGCTGAGGNAAGGAGGNCGNCTGGCTTACAAGAAGAGGGGNN
NNNNNNGNNGGNTTTCAAAAAAAAGAGGGNGGNNNGAGAGNGAAGNAAGA
AAAGAAAGGAAAAAAAGGTTTGGNACCGAAGAGGAGGGGAGAGAGAGGNG
AAAAAAGAGAAAAGAGAGGAGGAAGAAGGGGAAAAGGNAGGGAAAAGGAG
AAAGAAGAGAAGAGAAGAAGAAAAAAAGGAAGANGGAAGGGGGGGNGAGG
AGAAGAGATTGAAAAANAAGATAGAGAAAGAAGAAGAAAAAAGAATGAAA
AGGAAGAAGAAAAGAGAGAAAGTTTTTTTTTGAGAAAGGGGAGGGGAGAG
AGGAGAAGGGATTTAAATTGAGTTCAGAAACAAAACCGAGGTGTAAAAGA
AGATATGGAGGAGGGGGGGGGGGGGGNAAAAAAAGGGGAGGNNNAAAAGG
GGGNNNNGGNNNNNGGGGNNNNNANNNNAAAAGAAGAGAGAGAAGAGGAG
AGAAGAAGGGAGGGGAAAGGGGGGGAGAGAGGAGGAGAGGAGGAAAAAAA
AGAGGAGGAGGGAGAGGGGAGGAAAGAAAAAGAGGAAGAAAAAAAAAAAG
GGGAAAAAAGAGAAGAGGGAAAAAAGGGGGAGGAAGAAAAAAGGGGAAGG
GGGGGGGGGGGGGAGGAGAGGGGAAGAAAAAAGGAGGAGAGAGAGAAAGG
GAGAGGGTAGAGTGTGGGGGGAAATAATAGGGAGAGGGAGGAGGAGGAGG
GGAGAGAGAAGAATAAAAAAANAGAAAGAAGGATAAGTATGAAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_j10.b1 MSMg01no211_j10.b1 CHROMAT_FILE:
MSMg01no211_j10.b1 PHD_FILE: MSMg01no211_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:36:52 2005
         (187 letters)



>mm_chr4_61851682_61852269
          Length = 588

 Score =  350 bits (181), Expect = e-101
 Identities = 184/185 (99%), Gaps = 1/185 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaa-tcagatctctgtacttgcttaacaagcactttactgattatgatatctccttatt 62
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagatctctgtacttgcttaacaagcactttactgattatgatatctccttatt 263

                                                                       
Query: 63  cactcttttaaaagattcgtattttaatctaaatatggagacaatttataataagtgtaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cactcttttaaaagattcgtattttaatctaaatatggagacaatttataataagtgtaa 323

                                                                       
Query: 123 aaatacagtattttctgtttaggtttgggatcaaggttaaattttattaccatcttatgt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaatacagtattttctgtttaggtttgggatcaaggttaaattttattaccatcttatgt 383

                
Query: 183 aaaga 187
           |||||
Sbjct: 384 aaaga 388


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 588
Length adjustment: 8
Effective length of query: 179
Effective length of database: 580
Effective search space:   103820
Effective search space used:   103820
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)