BAC Information

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BAC

Clone NameMSMg01-211J22
Chromosome4 (Build37)
Map Location 20,855,334 - 20,855,652
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667282, Ttpa, LOC667301, EG664800, E130310K16Rik
Downstream genePrdm13, Ccnc, 2610029I01Rik, Usp45, 4930528A17Rik, 5730406M06Rik, Coq3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211J22.T7 (MSMg01no211_j22.b1)MSMg01-211J22.TJ (MSMg01no211_j22.g1)
ACCAG393271AG393272
length730722
length of high quality
(start - end)
322 (45 - 366)290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no211_j22.b1 PHD_FILE: MSMg01no211_j22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:55 2005CHROMAT_FILE: MSMg01no211_j22.g1 PHD_FILE: MSMg01no211_j22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATGTCCTATAAATATTTGTGATTTCTACACGTCAATTAAAATTTT
AATGGAAATAAAAGACTGATTGAGGCCCATGCAGAATTTACTTGAAAAAA
GACAACACAAAATCTCTTTTTAAAAGGGAACAAAAGTCTAACAATTTAAC
ATTCTCAGATTTAAGTACTGAATCAAAATATATTCTGCATGTATAAAATC
ATGGAATCCTGTGCATTTCAAAGAATATGAGAGAATAAACAAGGATATTA
TCTAAAGAGACAGCAGAGACTAGATCCTGAACACAGGGGCAAAGATTAGC
CTCAGATCTAACTGAATATGTTTAGGCCCGCTCCCACACCATAATGTATG
TGAAACTTCTGTGTCCTACTGGCAGCTTGATATGAAACCTGCTCCTTTGA
ACCTCACTTATAGTGGCCATTAGATCATGACCCTGGACACACAACCCTAA
GCTGTTTCTGTTCATTAGCAGGCAACCCTTTCAGTGTAATTCTGTTGTAT
TGCTCAATAATTTCATTAATTTTTAATTATGACTTGGCCAGCCCTCCAAT
AATTGGGATTTGATCCTATTGATTTATGTAATCTGCTTTAGCACAATTAC
CGAGTAACTATACCTAATATACTTTCTATGATAGACGGGTAGTTTCTCAA
CTGGGATCCCCAATTACTTGCTGTTTGAGC
TCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACTTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAATATGTTCAACACCCTTAATCATCAGGGAAATGCAAA
TCAAAACACCCCTTAGATTCCACCTCACACCAGTTAGAATGGCTAAGATA
AAAAATTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAAC
ACTCTTCCATGGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAAT
CATTCTGGCAGTTCCTCAGAAAATTGGATATAGTACTACCGGAGGATCCC
ACAATAACTCTTTGGGGTAAACCCNNAGACAATNGCCCAATCGATAAGAA
GGACACATGGTCCACTATGTTCATAAAAAAAAAAAAAATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATTTACACAAGGAAGTACTACTCAGCTATTAAAAAGAATGAGTT
TATGAAATTCCTAGGCAAATGGTTGGACCTGGAGGGCATCATCCTGAATG
AGGTAACCCAATCACAAAAGAACTCGCACAACATGTACTCACTGATAAGT
GGATATTAGTCCAGAAATTTAGAATACCCAAGATATAAGATACCATTTGC
TAAACACATGAAACTTAAGCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_j22.b1 MSMg01no211_j22.b1 CHROMAT_FILE:
MSMg01no211_j22.b1 PHD_FILE: MSMg01no211_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:36:55 2005
         (322 letters)



>mm_chr4_20855131_20855852
          Length = 722

 Score =  601 bits (311), Expect = e-176
 Identities = 317/319 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctatgtcctataaatatttgtgatttctacacgtcaattaaaattttaatggaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctatgtcctataaatatttgtgatttctacacgtcaattaaaattttaatggaa 263

                                                                       
Query: 64  ataaaagactgattgaggcccatgcagaatttacttgaaaaaagacaacacaaaatctct 123
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ataaaagactgattgaggtacatgcagaatttacttgaaaaaagacaacacaaaatctct 323

                                                                       
Query: 124 ttttaaaagggaacaaaagtctaacaatttaacattctcagatttaagtactgaatcaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttttaaaagggaacaaaagtctaacaatttaacattctcagatttaagtactgaatcaaa 383

                                                                       
Query: 184 atatattctgcatgtataaaatcatggaatcctgtgcatttcaaagaatatgagagaata 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atatattctgcatgtataaaatcatggaatcctgtgcatttcaaagaatatgagagaata 443

                                                                       
Query: 244 aacaaggatattatctaaagagacagcagagactagatcctgaacacaggggcaaagatt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aacaaggatattatctaaagagacagcagagactagatcctgaacacaggggcaaagatt 503

                              
Query: 304 agcctcagatctaactgaa 322
           |||||||||||||||||||
Sbjct: 504 agcctcagatctaactgaa 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)