Query= MSMg01no211_o12.b1 MSMg01no211_o12.b1 CHROMAT_FILE:
MSMg01no211_o12.b1 PHD_FILE: MSMg01no211_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:28 2005
(426 letters)
>mm_chr4_113266714_113267539
Length = 826
Score = 574 bits (297), Expect = e-168
Identities = 384/419 (91%), Gaps = 14/419 (3%)
Strand = Plus / Plus
Query: 18 ggaattccatggctgaaattctcatattcattgagttattctattctcacctctaaaacc 77
||||||||||||||||||| |||||||||||||| ||| |||||||| ||||||||||||
Sbjct: 210 ggaattccatggctgaaatcctcatattcattgaatta-tctattcttacctctaaaacc 268
Query: 78 tattaccatttttttgtttttcattttttatt----------aaaaacatatgcatggga 127
|||||||| |||| |||||||| ||||||||| ||||| | ||||||||||
Sbjct: 269 tattacca-ttttctgtttttccttttttatttaaaaaaaaaaaaaagaaatgcatggga 327
Query: 128 tatccactgtttggcagagtccactatacatttttactctagctgtacttgatcctttgg 187
| |||| ||||||||||||||||||||| |||||||||||| ||||||||| |||| |||
Sbjct: 328 tgtccagtgtttggcagagtccactatatatttttactctacctgtacttgttcctgtgg 387
Query: 188 gtcaacctcctgtcatatttattttttcaagtgctattgatttttccataaagcctggtg 247
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 388 gtcaacctcctgtcatatttattttttcaagtgctattgacttttccataaagcctggtg 447
Query: 248 atgtaaccattatcagagaagagctcttagcatttctggcatggctcctcctttaatttg 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 atgtaaccattatcagagaagagctcttagcatttctggcatggctcctcctttaatttg 507
Query: 308 aaaactctgttcctgttatatcttgtgattgaagaattaggaaaccctggggttacattt 367
||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aaaacactcttcctgttatttcttgtgattgaagaattaggaaaccctggggttacattc 567
Query: 368 catgtgatatatcaacatcttcccccat-aggatccacagtatcaccctaaatttcatc 425
||||| ||||||||||||| ||||||| || |||||||||||||||||||||||||||
Sbjct: 568 catgttatatatcaacatcaccccccattag-atccacagtatcaccctaaatttcatc 625
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space: 340689
Effective search space used: 340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no211_o12.g1 MSMg01no211_o12.g1 CHROMAT_FILE:
MSMg01no211_o12.g1 PHD_FILE: MSMg01no211_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:28 2005
(375 letters)
>mm_chr4_112571757_112572532
Length = 776
Score = 340 bits (176), Expect = 6e-98
Identities = 285/326 (87%), Gaps = 17/326 (5%)
Strand = Plus / Minus
Query: 54 aagagaacttaaacccatggtctgtgaatatagagatgtaaaatttaatgctgttagtag 113
||||||| ||||||||||| |||||||||||| ||| ||||||||||||||||||||||
Sbjct: 776 aagagaaattaaacccatgatctgtgaatatattgatataaaatttaatgctgttagtag 717
Query: 114 gattgtctagctgctactgtatccctaactttagggaaca--tctgtacaggagaaagaa 171
|| || ||||||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct: 716 gagtgcctagctgctactgtatccctagctttaggg--catttctgtacaggagaaagag 659
Query: 172 caggagtgttt--aaaagtacagaaaatatgttaattttcagccattcatgatc--caag 227
| | ||||||| ||| || ||||| ||||||||||||||| ||||||||| |||
Sbjct: 658 ctgaagtgtttggaaa--tatagaaa--atgttaattttcagctgttcatgatccacaa- 604
Query: 228 gccacaattaaaatttcaaatg-aaagatgtaaaagtctacatgtgactatggtatgcat 286
||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||
Sbjct: 603 -ccacaattaaaatttcaaatgaaaag-tgtagaagtctacatgtgactatggtatgcat 546
Query: 287 gcatggtggtgtttaataaagctataaatattaaaactgttattttggggcatgagaaga 346
|||||||||||||||||| ||||||||||| || || || ||||||| |||||||||| |
Sbjct: 545 gcatggtggtgtttaatacagctataaatagtataattgatattttgtggcatgagaaaa 486
Query: 347 atataaaa-taaatccatattataac 371
| |||||| ||||| |||||||||||
Sbjct: 485 aaataaaagtaaattcatattataac 460
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 776
Length adjustment: 9
Effective length of query: 366
Effective length of database: 767
Effective search space: 280722
Effective search space used: 280722
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
