BAC Information

Click to search

BAC

Clone NameMSMg01-212O08
Chromosome4 (Build37)
Map Location 108,149,858 - 108,150,132
singlet/doubletsinglet
Overlap geneZcchc11
Upstream geneGlis1, Dmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728
Downstream geneLOC100040110, Prpf38a, Orc1l, Cc2d1b, Zfyve9, LOC100040326, 3110021N24Rik, Btf3l4, Txndc12, Kti12, Rab3b, Nrd1, Osbpl9, Calr4, Eps15, LOC666144, 4922503N01Rik, Rnf11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212O08.T7 (MSMg01no212_o08.b1)MSMg01-212O08.TJ (MSMg01no212_o08.g1)
ACCAG394085AG394086
length723718
length of high quality
(start - end)
259 (42 - 300)275 (71 - 345)
definitionCHROMAT_FILE: MSMg01no212_o08.b1 PHD_FILE: MSMg01no212_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:47 2005CHROMAT_FILE: MSMg01no212_o08.g1 PHD_FILE: MSMg01no212_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAATGCCTTTTTAAAGATTTATTTTATGTATATGAGTACACTGTAGCTGT
CTTCAGACACACCAGAACAGGGCATCAGATCCCATTACAGATGGTTGTGA
GCCACCATGTGGTTGCTAGGAATTGAACTCAGGACCTCTGGAAGAGTAGT
CAGTGCTCTTAATCACTGAACCATCTCTCCAGCCCAAAATAAATAATTCT
TTTTTTTTCTTTTTTAAAGAGGGGAACAAGTCACTAAATTTGGCTCATGG
TAAGAAGAAAGGACTTGAGTTCCAGTCCTTATCAGTCCATGGTACATCTC
TTTTTTTATCCCTCCCCACCCCCCGGTCAGAATGATCACGTATAATAAGA
CTCTATTCCACAAAAAACAAACAAAATCCCTGATCTGTGGATAAATATAT
TATGACCACCACCTTTTTTTTTTCCAGACTACCTTATGTAGCTTACGCGA
TCTCAGACTTTCTCTCTTGCCTCTGCTTTCTCTGTGCCGAGATTACCGGT
GTTTCCCGCCATTCCCAGTTCCTGGGTTATTTCTTTCCCTTTTAGTCGCC
TAGGGGCTTTTGTATTGTTGAGTCTTGCCCCTTCTAATCTCATTACTACC
CCCCTTACCTTTCCTATCTTATATTTTCGCCGATTTACCTTTTCACACTA
ACATCTTATTTAATTTACTACTG
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAATTTACTTGCAACTGTAATATATGCAAAA
CTATACACACAAAAAGAAATCTTAAATCTATGTATGTCTGCATCTCATCC
AGGTGGAATCATAATTCGTAATTCTAATTTGCAGGAAAGTTCTCTATACA
TACTGTTTTAATTTCAGCCTAGATTACTATTATCTTCATTTAGTTTTTTA
TTTTAAAGTCAAGTTTTTCTTTAAGAAACTTCACCTGTAATTAATTAATT
CACTGTCTACTGGTTAGGCTTAAGTTCAAGAATTCTCAATAAAGCCCATT
CTTTTTTTTATCCCCCCCCCCCCCACTTGGACTATCAATACCCATAATTC
ATTTATTCTCCCCCTCAAGATTTATTTATTTTACGTATATATGTGAGTAC
ACTGTCAATGTCGCCAGACACACCACAATAGGGCTTTCTTATCTCATTAC
AGATGATTGCGAGCCACCCATGTGACTACTGGTAACTGAACTCTGAACCT
CTGGAAGAACACCCTTATGTTCTTATCTCCTGATCCATCTCCCCTTTCCC
TCTTTTATTCTTTTATCACTGCATGAAACAAGGATTAACTTATTCTAGAT
CTTTGGCATTTAATTATCTTCTAACATTTTATTTTAAATTCCACTCTTTA
TTTCCCCCGCCTCATTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_o08.g1 MSMg01no212_o08.g1 CHROMAT_FILE:
MSMg01no212_o08.g1 PHD_FILE: MSMg01no212_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:47 2005
         (275 letters)



>mm_chr4_108149658_108150332
          Length = 675

 Score =  516 bits (267), Expect = e-151
 Identities = 273/275 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatttacttgcaactgtaatatatgcaaaactatacacacaaaaagaaatcttaaatcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 aatttacttgcaactgtaatatatgcaaaactatacacacaaaaagaaatcttaaatcta 416

                                                                       
Query: 61  tgtatgtctgcatctcatccaggtggaatcataattcgtaattctaatttgcaggaaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tgtatgtctgcatctcatccaggtggaatcataattcgtaattctaatttgcaggaaagt 356

                                                                       
Query: 121 tctctatacatactgttttaatttcagcctagattactattatcttcatttagtttttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tctctatacatactgttttaatttcagcctagattactattatcttcatttagtttttta 296

                                                                       
Query: 181 ttttaaagtcaagtttttctttaagaaacttcacctgtaattaattaattcactgtctac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ttttaaagtcaagtttttctttaagaaacttcacctgtaattaattaattcactgtctac 236

                                              
Query: 241 tggttaggcttaagttcaagaattctcaataaagc 275
           |||  ||||||||||||||||||||||||||||||
Sbjct: 235 tggggaggcttaagttcaagaattctcaataaagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space:   177156
Effective search space used:   177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)