BAC Information

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BAC

Clone NameMSMg01-213D09
Chromosome4 (Build37)
Map Location 27,016,990 - 27,017,264
singlet/doubletsinglet
Overlap genenone
Upstream geneManea, Bhmt-ps1, LOC665079, Gng2-ps1
Downstream geneLOC100040691, Tpm3-rs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213D09.T7 (MSMg01no213_d09.b1)MSMg01-213D09.TJ (MSMg01no213_d09.g1)
ACCAG394287AG394288
length740718
length of high quality
(start - end)
276 (44 - 319)289 (71 - 359)
definitionCHROMAT_FILE: MSMg01no213_d09.b1 PHD_FILE: MSMg01no213_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:11 2005CHROMAT_FILE: MSMg01no213_d09.g1 PHD_FILE: MSMg01no213_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTGTGGTTATCCAAAACTATAGAAAATACTCTTATTTATTTGTGTT
GGCATGAGTTGATTTATGGAGCGCGACAAGGGAAAGAATCCTAGCACATC
TCATATCTCTATCATACTTGTTCTCAAAGCACACAATACAATCAACAAAA
ATCAAACAACTAGAGAAACACAAATAAAAAAAAACCAAACACACACACAC
ACACCCATATATATTTTATATATGTATATATATGGGTGGAAATTATGGAT
AGATGATAAAGAGATAGATTATTTTTTTGAACCTTGGTTAGTAGAACGCG
CGTCCAATTTTTTTTTTCTCCCACCCCCCCCTGAGGAAGTCTATATGTCT
GTTGTATTATTTGTTTTTCCCCCCCCCACAAAATACTTTACTGTATCGCC
CCCTGCATCCATTGTGCATTTGTCAGTAATTTGACTCCCAATGATTCCTT
TTTGCAGGTTTTATCTCTCCACCTTTTACACACTCTGCCCCTGTATAATC
ATTATTTCTATTTTTTTCTCCCCCCCCATCTATATGATATTGATTTTTCC
CCCTTTTCCTCGTGCATCTTATTACAACGCTTTTAATTATTCGCTTGTCA
CACCTTGCCAATTACCCCTTTTTTTTCTTTTTTTCCCCGATTTCTAATCT
TCCCCTCTTTTCCCTTTTTTTTCCCCTTTCTCCTTTTTTG
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAACTTCACTGCACTGACTCTCAGCTCATTG
ATTCAACTTCACTGGCTGACTAGAACTATGAAATCTCCATGCCTCTGTCT
CCTAAGTGCTGGGATTAAAGTTGTGTGTAGTCACGCCTGGAGATAAGCAT
TTCTTTACCTGAAATTTGCTCTATGCCAGGCTAGTGTTTGCTCAGAGATA
TTCTTGCCTGTTTCTTGGGGATAAAAGCTTGTCTATTCCAGCCAGATTAT
ACAAACCTGGAAGTTTTGGATGTAATCCCTTGCTAGATCAGTCATATTGC
TGGATTATATTTCCTCTCCACCACCCTATCACAGCAATACCCCAGAATGA
GTTCTTAGATTTGCCACCCAATAAAAGGATATATGGGTGTAGGCTCTCCC
AGCCTGAAGCAGGCTGATCCAGACTTTGACCTTGTTGCCACTAGAAGGAA
ATTACCTAGGGTGGAGCCTTCTGACCTAGATGGCTCTATTGTTCAGTCAC
CTGCCACTTCTCTCTCCAAGACACTGCTACCTGCTGAGAGGTATCCTGCA
CATGTTGGCTCAGACTCTATGAATGGACTGACTGGTTATGTTCCTTGTCC
CTTATAAGCTTATTCTCTTAGTAAACTGTCAGGCCATGAACAGATCCTTG
TCCTGCTTTCCATTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_d09.b1 MSMg01no213_d09.b1 CHROMAT_FILE:
MSMg01no213_d09.b1 PHD_FILE: MSMg01no213_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:11 2005
         (276 letters)



>mm_chr4_27016786_27017464
          Length = 679

 Score =  453 bits (234), Expect = e-132
 Identities = 265/278 (95%), Gaps = 9/278 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgtgg--ttatccaaaactatagaaaatactcttatttatttgtgttggcat 62
           |||||||||||||  || | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gaattctctgtgggatt-t-caaaactatagaaaatactcttatttatttgtgttggcat 422

                                                                       
Query: 63  gagttgatttatggagcgcgacaagggaaagaatcctagcacatctcatatctctatcat 122
           |||||||||||||||| | ||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 421 gagttgatttatggagtgggacgagggaaagaatcctagcacatctcatatctttatcat 362

                                                                       
Query: 123 acttgttctcaaagcacacaatacaatcaacaaaaatcaaacaactagagaaacacaaat 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acttgttctcaaagcacacaatacaatcaacaaaaatcaaacaactagagaaacacaaat 302

                                                                       
Query: 183 aaaaaaaaaccaaacacacacacacacac----ccatatatattttatatatgtatatat 238
           |||||||| ||||||||||||||||||||    |||||||||||||||||||||||||||
Sbjct: 301 aaaaaaaa-ccaaacacacacacacacacacacccatatatattttatatatgtatatat 243

                                                 
Query: 239 atgggtggaaattatggatagatgataaagagatagat 276
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 242 atgggtggaaattatggatagatgataaagagatagat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 679
Length adjustment: 9
Effective length of query: 267
Effective length of database: 670
Effective search space:   178890
Effective search space used:   178890
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)