XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTA
CCACACTTGTGCTGTTTTTACTGTTCACTTTCAGATCATATGATCTGATA
AATGGAGGCCCTTCAAATCCAGATCTCATGCTAGAACAGGAACATGACAA
TTTAAATAGAAGAATTTGAAGATAAAGAAGTGTGACAAGAATCACTGTAT
GGTTTTACCAAGGGCTATTTTGTTGTTGTTGTTTCCAATTATATTAGCCC
AACTTAAGGACTTTAATATGGTATGTTTAAAAATAGTGTGACTAAAAGAA
TTGTTTTCCCCAGATTTATAAAAATTCACCACTACCTACTAAATACTTTA
CTACCTATATTATTCTTCACGCCTATCCACATTATTTTGTCAGTAAGCAA
GCATTTGAAGTAGGCCTATAGAAACTTATGACCTGGCTCAGATACTGAAG
AGCAGCTAAAATAAACTGCCCATAAGCATGTGAAAATGTAGCTTATTTAA
ACTGAACATTAAAGAAAAACAGAATTAAAATAATCAATTCCTGACCCCAA
CCACAAGTAGATGCTTTAAATAAGTGAACATATTGCATTTTATTTTATCA
AACACCACAAGCTCTTTACAGCATCAGAAATGACAAAATACTTTTTAAAA
TACTCCTTCAGTATACTAGAATTGGGTTTTCGATTTGTCTGGTCATTTAC
TTTTTGTTGTGGTTACN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXGGTTAGCCCTTTTGAAAAAGTACACATTGTCCG
TCTACAGTGGCTGCTTGCAGAATTTGCTTGTCTTCATTTAGTGGCATAGG
GTCCAGTTTTAGAAAAGTCAGGATCTTTGAGTATGTCATAGGAAAAAGTC
TAAAGTTAGTAAACTTAAAAACAAAATTAAAGCTCAATGTACTATATCCA
GTGAAAAGTTTGAAATAACACACTTTTCCCATCTGAATTTCATAAATTTG
AGCCAATCTTATACTTCATATTTTAAGAGGACAATTTCAATTAGAAATTT
AATATTTTGAAAACACCCCCCCCCACTGAAAACCCTAAAGCAGGATTTTT
AAGATTGTGACTTTCTGAGAAAAACCTATCTTTTCTACAGAGCTATTGTG
TCCTTTCTTCCTTCCCGTTTTTTGATTTCTTTGTATGTGTAACAATAGAC
CAACAAGGATTGCATTTCACTCTTGCATGAACAATTGATCCTTTTGTAAA
TTACAAGTACAGGTTTCAAGTTTGGTATTTTCTAGGGGTTCATCCTTAGA
GAATTTGTTTAAAAAGTTGAAAATGATTATGAAAAAAAATTGATTAGGGA
CCCAAATAATACACTGGCCCTTCATTTTTAACACTCCATTTTTACAATCC
TAAATTAATTTTATTCCCGAACCAG

Query= MSMg01no213_i03.b1 MSMg01no213_i03.b1 CHROMAT_FILE:
MSMg01no213_i03.b1 PHD_FILE: MSMg01no213_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:33 2005
         (330 letters)



>mm_chr4_53662932_53663661
          Length = 730

 Score =  607 bits (314), Expect = e-178
 Identities = 323/326 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaccacacttgtgctgtttttactgttcactttcagatcatatgatctgataaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gaattctaccacacttgtgctgtttttactgttcactttcagatcatatgatctgataaa 471

                                                                       
Query: 65  tggaggcccttcaaatccagatctcatgctagaacaggaacatgacaatttaaatagaag 124
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 470 tggaggcccttcaaatccagatctcatgctagaacaggaacgtgacaatttaaatagaag 411

                                                                       
Query: 125 aatttgaagataaagaagtgtgacaagaatcactgtatggttttaccaagggctattttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 aatttgaagataaagaagtgtgacaagaatcactgtatggttttaccaagggctattttg 351

                                                                       
Query: 185 ttgttgttgtttccaattatattagcccaacttaaggactttaatatggtatgtttaaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ttgttgttgtttccaattatattagcccaacttaaggactttaatatggtatgtttaaaa 291

                                                                       
Query: 245 atagtgtgactaaaagaattgttttccccagatttataaaaattcaccactacctactaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 atagtgtgactaaaagaattgttttccccagatttataaaaattcaccactacctactaa 231

                                     
Query: 305 atactttactacctatattattcttc 330
           ||||||||||||||| ||||| ||||
Sbjct: 230 atactttactacctaaattatacttc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no213_i03.g1 MSMg01no213_i03.g1 CHROMAT_FILE:
MSMg01no213_i03.g1 PHD_FILE: MSMg01no213_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:33 2005
         (284 letters)



>mm_chr4_53582298_53582981
          Length = 684

 Score =  534 bits (276), Expect = e-156
 Identities = 282/284 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggttagcccttttgaaaaagtacacattgtccgtctacagtggctgcttgcagaatttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggttagcccttttgaaaaagtacacattgtccgtctacagtggctgcttgcagaatttgc 260

                                                                       
Query: 61  ttgtcttcatttagtggcatagggtccagttttagaaaagtcaggatctttgagtatgtc 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 ttgtcttcatttagtggcatagggtccagttttagaaaaatcaggatctttgagtatgtc 320

                                                                       
Query: 121 ataggaaaaagtctaaagttagtaaacttaaaaacaaaattaaagctcaatgtactatat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 ataggaaaaagtctaaagttagtaaacttaaaaacaaaattaaagctcaatgtagtatat 380

                                                                       
Query: 181 ccagtgaaaagtttgaaataacacacttttcccatctgaatttcataaatttgagccaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagtgaaaagtttgaaataacacacttttcccatctgaatttcataaatttgagccaat 440

                                                       
Query: 241 cttatacttcatattttaagaggacaatttcaattagaaattta 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttatacttcatattttaagaggacaatttcaattagaaattta 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)