Query= MSMg01no214_b10.b1 MSMg01no214_b10.b1 CHROMAT_FILE:
MSMg01no214_b10.b1 PHD_FILE: MSMg01no214_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:18 2005
(682 letters)
>mm_chr4_153382175_153383256
Length = 1082
Score = 1218 bits (630), Expect = 0.0
Identities = 672/698 (96%), Gaps = 20/698 (2%)
Strand = Plus / Minus
Query: 4 ggaattctgggaacttttcagagggtgcataaatgctaggggcctggagaaaatggggtg 63
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 986 ggaattctggggacttttcagagggtgtataaatgctaggggcctggagaaaatggggtg 927
Query: 64 agtggttgctggccattcaagggggctggctgcagtttgttaggagtcgtgctcaaagaa 123
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 926 agtggttgctggtcattcaagggggctggctgcagtttgttaggagtcatgctcaaagaa 867
Query: 124 gaaacaagaaagagattagactcaggg-------------------ctctctctctctct 164
||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 866 gaaacaagaaagagattagactcagggctctctctctctctctcctctctctctctctct 807
Query: 165 ctcaaacacacacatccttctatccactctctcctatctagtgacaggaaacgagactgg 224
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 806 ctcaaacacacacatccttctatccactctctcctatctagtga-aggaaacgagactgg 748
Query: 225 ggggataaagggcaaaaagaggacaagcccacaacgtagcaaagccaggctaaagatggg 284
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ggggataaagggcgaaaagaggacaagcccacaacgtagcaaagccaggctaaagatggg 688
Query: 285 taataaaagtgacatgacactgaacgatctttactgtattagtgtactcaaggcaaatta 344
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 687 taataaaagtgacatgacactgaacgctctttactgtattagtgtactcaaggcaaatta 628
Query: 345 gcacataaaccctcaaacagcaacaataaaaatatattattctatacctgaaataaagac 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gcacataaaccctcaaacagcaacaataaaaatatattattctatacctgaaataaagac 568
Query: 405 aaatagaaaactatgttaaaacattaaaaagttgcaaattttcattaaaggtatttacat 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aaatagaaaactatgttaaaacattaaaaagttgcaaattttcattaaaggtatttacat 508
Query: 465 ctgtattctagtattagatatgacacaattcttttaaattaaatagaatcttttatgaaa 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ctgtattctagtattagatatgacacaattcttttaaattaaatagaatcttttatgaaa 448
Query: 525 ataatataaataaatattaaatatccacactgtagcatacgtgaagctctgaggagtgtt 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ataatataaataaatattaaatatccacactgtagcatacgtgaagctctgaggagtgtt 388
Query: 585 ccacttagatattgtgagtggctgggggtgcgcagctccttccctgaatcaagcagtgag 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ccacttagatattgtgagtggctgggggtgcgcagctccttccctgaatcaagcagtgag 328
Query: 645 gtggagcttggtggctgccagtactgccagtcacctct 682
||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gtggagcttggtggctgccagtactgccagtcacctct 290
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space: 720384
Effective search space used: 720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no214_b10.g1 MSMg01no214_b10.g1 CHROMAT_FILE:
MSMg01no214_b10.g1 PHD_FILE: MSMg01no214_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:18 2005
(281 letters)
>mm_chr4_153356351_153357032
Length = 682
Score = 538 bits (278), Expect = e-157
Identities = 281/282 (99%), Gaps = 1/282 (0%)
Strand = Plus / Plus
Query: 1 aagtttgtccaaaacaaccttgtgagcacacacacgtttataccactcgctgcccctcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagtttgtccaaaacaaccttgtgagcacacacacgtttataccactcgctgcccctcca 260
Query: 61 aggagagcaggagcaagccaacaggtcacactgtcttagcaggcaaatgagctgtga-ac 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 aggagagcaggagcaagccaacaggtcacactgtcttagcaggcaaatgagctgtgagac 320
Query: 120 atggctgcatcacaagatccactgtagcatggcctcatggggaaactgcagcaaccattt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggctgcatcacaagatccactgtagcatggcctcatggggaaactgcagcaaccattt 380
Query: 180 ctaatgttttttcttcttccacctcatctgcacgtttccacctgtaggactaggagcttg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaatgttttttcttcttccacctcatctgcacgtttccacctgtaggactaggagcttg 440
Query: 240 ggccacagtgatgggtgggaaagagaagcaacttctccacta 281
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggccacagtgatgggtgggaaagagaagcaacttctccacta 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 682
Length adjustment: 9
Effective length of query: 272
Effective length of database: 673
Effective search space: 183056
Effective search space used: 183056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
