BAC Information

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BAC

Clone NameMSMg01-214J09
Chromosome4 (Build37)
Map Location 152,935,719 - 152,935,905
singlet/doubletsinglet
Overlap genenone
Upstream geneNphp4, LOC667039, Gm833, LOC100042089, Ajap1
Downstream geneBC039966, A430005L14Rik, Dffb, BC046331, Lrrc47, 1190007F08Rik, Ccdc27, Trp73, Wdr8, 1200015A19Rik, Megf6, Arhgef16, Prdm16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214J09.T7 (MSMg01no214_j09.b1)MSMg01-214J09.TJ (MSMg01no214_j09.g1)
ACCAG395176AG395177
length753800
length of high quality
(start - end)
---187 (184 - 370)
definitionCHROMAT_FILE: MSMg01no214_j09.b1 PHD_FILE: MSMg01no214_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:57 2005CHROMAT_FILE: MSMg01no214_j09.g1 PHD_FILE: MSMg01no214_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCN
GGATCTCAGTCATTCACCCAAAAATTTCCTAGTGCCGATCTAAGAATCAT
GAGCTGTCATGGGTGGACTACTTTTTTTTCTCACAAACATTGACGATTAT
AATCATCCTCAGTACCGTGGGATAGATCTGACGACTGTGCACTATTGCCC
AGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCATA
TGTGACTTATCCTGGACACATTGAGAATGAACCCTTGTTTCTTGCTATTA
TTAATGAGTCACATGCATACCTTTTTTTTATGCACACCCCCCCCGAGAAG
AAAAGACAATGAGGTTTTGTTTTCGGCAGCCCCACATCAAAAAACATGAA
TGAGCGGTGGCCAGTACAGCTTCTGCACGCCAGAGTCGCGTACCTTTTAC
TTCTCGACCATGATGTACCTTGACCACTTGTATAATTATCATCGAXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCTA
ATG
CTACCGTTTTTTCTTTTTTTTTTTATTCTTTTAATATACCCACCCTTAAA
TTATCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTCCCGAGAAATTCACTTCTACCAAGTTGGTGGAG
ACATCCAATGTCAAGGCCTTTTACACGCACTGATGGTAGAGACTGAAAAT
CTCCAGTGCGAGAGAAGACCTTGCCCCTCCCTCACCTCAGTCTGTGAGAG
AGGAAGTGCTCACTCAGCCCTGCCCCAAGTGGACTGTTCACTGTTGCTCC
AAAGCCTTCTATAACCCAGAGCTGGTTCACACTTCCCCGTGGATGTCAGC
ACAGTAACTTGCTCTTGAGGCTTGTTTTTTGAGCCTTGAGTAATACACTC
TGTCCATAATGTTTGTTATGACCCCCGCCACGCACACGCACAACTGTGAG
GTCGGGACCAACTCTGTCCCACCCCAAATAAAGAGAGTCCACACACCTCT
AATCCTTCACATCAAGCTTTCTCGAAGGATCTGTTGACCAAAGTTTGGAA
GCTGTGGCCAGATCTGCTCTGTGAACTGAAGATGCGAATGTAATTAGGAT
GATGCCTAAAGGCCACGCTGCCTTTCTTTCATGCTTCTCATATTCAGGTG
AACATTTCCAAAGGCCTTTGCGGAAGTAGCACCTTTATGTTATGTTTTGT
ATTAACGCTTATGATTATATACCACGACTATGTATCACTATTTTTTTTCA
TCCTTCCAAATTATAATTTATTTTTCATTTTAAAACTGTTCATAAATAAG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_j09.g1 MSMg01no214_j09.g1 CHROMAT_FILE:
MSMg01no214_j09.g1 PHD_FILE: MSMg01no214_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:57 2005
         (187 letters)



>mm_chr4_152935519_152936105
          Length = 587

 Score =  339 bits (175), Expect = 9e-98
 Identities = 184/187 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggtagagactgaaaatctccagtgcgagagaagaccttgcccctccctcacctcagtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tggtagagactgaaaatctccagtgcgagagaagaccttgcccctccctcacctcagtct 328

                                                                       
Query: 61  gtgagagaggaagtgctcactcagccctgccccaagtggactgttcactgttgctccaaa 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gcgagagaggaagtgctcactcagccctgccccaagtggactgttcactgttgctccaaa 268

                                                                       
Query: 121 gccttctataacccagagctggttcacacttccccgtggatgtcagcacagtaacttgct 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct: 267 gccttctataacccagagctggttcacacttcccggtggatgtcagcacagtaacttgcc 208

                  
Query: 181 cttgagg 187
           |||||||
Sbjct: 207 cttgagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 587
Length adjustment: 8
Effective length of query: 179
Effective length of database: 579
Effective search space:   103641
Effective search space used:   103641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)