Query= MSMg01no214_k09.b1 MSMg01no214_k09.b1 CHROMAT_FILE:
MSMg01no214_k09.b1 PHD_FILE: MSMg01no214_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:02 2005
(294 letters)
>mm_chr4_152817833_152818526
Length = 694
Score = 516 bits (267), Expect = e-151
Identities = 288/295 (97%), Gaps = 2/295 (0%)
Strand = Plus / Plus
Query: 1 agctctagcctgacctaaggctcatgaccatctgcagcgactactgccttctcatcctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctctagcctgacctaaggctcatgaccatctgcagcgactactgccttctcatcctca 260
Query: 61 ggatgagactaacatccacaggacctgtggtgatctgggactgtgcctttgtcccccaag 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 ggatgagactaacatccacaggacctgtggtgatctgggactgtgcctttgtcccc-aag 319
Query: 121 gtaggctcatactgagaatcatggaactctcagcttgaaaaggaagactgccaagcaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtaggctcatactgagaatcatggaactctcagcttgaaaaggaagactgccaagcaggt 379
Query: 181 ggccgatgctccccaaggtgagccccttccgtacctggcttaacctgccccccccca-ga 239
|||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 380 ggccaatggtccccaaggtgagccccttccgtacctggcttaacctccccccccccccga 439
Query: 240 aacaaggctttctcttgctcttatgaatcagtcccctggagcccagagtatcatg 294
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 440 aacaaggctttctcttgctcttatgaatcagtcccctgaagcccagagtatcatg 494
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space: 195225
Effective search space used: 195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no214_k09.g1 MSMg01no214_k09.g1 CHROMAT_FILE:
MSMg01no214_k09.g1 PHD_FILE: MSMg01no214_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:02 2005
(286 letters)
>mm_chr4_152935506_152936191
Length = 686
Score = 484 bits (250), Expect = e-141
Identities = 274/286 (95%), Gaps = 7/286 (2%)
Strand = Plus / Minus
Query: 1 acttctaccaagttggtggagacatccaatgtcaaggcccataatacagcctgatggtag 60
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 454 acttctaccaagttggtggagacatccaatgtcaaggcccataaaacaggctgatggtag 395
Query: 61 agactgaaaatctccagtgcgagagaagaccttgcccctccctcacctcagtctgtgaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 394 agactgaaaatctccagtgcgagagaagaccttgcccctccctcacctcagtctgcgaga 335
Query: 121 gaggaagtgctcactcagccctgccccaagtggactgttcactgttgctccaaagccttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gaggaagtgctcactcagccctgccccaagtggactgttcactgttgctccaaagccttc 275
Query: 181 tataacccagagctggttcacacttccccgtggatgtcagcacagtaacttgctcttgag 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 274 tataacccagagctggttcacacttcccggtggatgtcagcacagtaacttgcccttgag 215
Query: 241 gcttgagccttgagccttgagtaacacactctgtccataaggcttg 286
|||||||||||||| |||||||||||||||||||||||||
Sbjct: 214 gcttgagccttgag-------taacacactctgtccataaggcttg 176
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
